Gene
RNA
| Item | Value |
|---|---|
| gene id | G221526 |
| gene name | LOC106591640 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 8840224 ~ 8908728 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| 28S ribosomal protein S29, mitochondrial-like isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU252852 | False | 563 | TUCP | 0.52 | 6 | 8840224 | 8908728 |
| TU252853 | False | 305 | lncRNA | 0.41 | 3 | 8840224 | 8847721 |
| TU252851 | True | 321 | TUCP | 0.36 | 4 | 8906618 | 8908728 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520836 | LOC106605888 | coding | upstream | 39760 | 8772336 ~ 8800464 (+) |
| LOC110520852 | LOC106605924 | coding | upstream | 68341 | 8767777 ~ 8771883 (+) |
| LOC110520796 | fam189b | coding | upstream | 75252 | 8715996 ~ 8766590 (+) |
| LOC110520870 | rab13 | coding | upstream | 125789 | 8703710 ~ 8714435 (+) |
| LOC110520846 | LOC106605923 | coding | upstream | 141064 | 8686537 ~ 8703190 (+) |
| LOC110516768 | LOC106605893 | coding | downstream | 18043 | 8865764 ~ 8878653 (+) |
| LOC118945318 | LOC106575331 | coding | downstream | 50300 | 8898021 ~ 8926057 (+) |
| LOC110520801 | LOC106605893 | coding | downstream | 58845 | 8906566 ~ 8912310 (+) |
| LOC110517169 | LOC106605893 | coding | downstream | 85050 | 8932771 ~ 8938698 (+) |
| LOC110520813 | LOC106605815 | coding | downstream | 134873 | 8982594 ~ 8987846 (+) |
| G221546 | NA | non-coding | upstream | 13467 | 8826050 ~ 8826757 (+) |
| G221545 | NA | non-coding | upstream | 15153 | 8822130 ~ 8825071 (+) |
| G221544 | ash1l | non-coding | upstream | 16419 | 8823124 ~ 8823805 (+) |
| G221469 | NA | non-coding | upstream | 38445 | 8800510 ~ 8801779 (+) |
| G221561 | NA | non-coding | downstream | 14617 | 8862338 ~ 8863661 (+) |
| G221525 | LOC106605893 | non-coding | downstream | 30113 | 8847836 ~ 8878616 (+) |
| G221567 | NA | non-coding | downstream | 38606 | 8886327 ~ 8919260 (+) |
| G221514 | NA | other | upstream | 107746 | 8728977 ~ 8732478 (+) |
| G221299 | s10i | other | upstream | 351157 | 8399071 ~ 8489067 (+) |
| LOC110520790 | LOC106606111 | other | upstream | 668001 | 8170634 ~ 8178058 (+) |
| G221539 | NA | other | downstream | 13779 | 8861500 ~ 8863976 (+) |
| G222089 | NA | other | downstream | 187637 | 9035358 ~ 9035833 (+) |
| G222102 | NA | other | downstream | 219425 | 9067146 ~ 9068151 (+) |
| G222287 | NA | other | downstream | 597326 | 9445047 ~ 9445704 (+) |
| LOC110520819 | LOC106575022 | coding | downstream | 554609 | 9463337 ~ 9483086 (+) |
| LOC118944441 | NA | coding | downstream | 576872 | 9485600 ~ 9486125 (+) |
| LOC110520820 | LOC107573682 | coding | downstream | 581605 | 9490333 ~ 9508263 (+) |
| G221534 | LOC106578276 | non-coding | downstream | 11951 | 8920679 ~ 8923497 (+) |
| G221579 | NA | non-coding | downstream | 44718 | 8953446 ~ 8953780 (+) |
| G221580 | NA | non-coding | downstream | 45071 | 8953799 ~ 8954033 (+) |
| G222062 | NA | non-coding | downstream | 47043 | 8955771 ~ 8956027 (+) |
| G222345 | LOC106594812 | other | downstream | 697577 | 9606305 ~ 9611139 (+) |
