G222435


Basic Information

Item Value
gene id G222435
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9071936 ~ 9072618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU254034
tccattcatAGCGCAACCGCTCATAACGTGCACTGACGCATAGGCGAGATAGGgatcagcgagagagagacagagagagggttggattagGGCACTCACAGCCACCTCAGTCAAACAGTTGAGAGACACACGGTCACAACCTGCTGAGGGGGCAAAACTAACGGGACCGGAAAGTCTAAATCCAATCCAGATCACCTCTTAACCGGTTAGGGAGAGGGGACCACCGACCACCTCGAGACCCCGCACTGATTGAAAAGAGGGCAGAGTTGGAGAGTAAAACAATCCGTTTTGAAAAATTATTCAAATTGATCTATCCAGCCACCCTATACTCTGAACCATGGAGCGCAAAATCCCTGACTTCGCTGGTACCTGGAAGATGAAGAGCTCAGAGAACTTCGAGGAGCTTCTCAAAGCGCTGGGTGAGTgatggtaatgatggtggtggtgatgatgatgatggcgatGAAGGGGATGGTGGTAAATATTTGTGGTACATATATCCCTAACTTTATTCTAGCCTATTATTCTAGCAGTTATTTAATTATTACTGATTGAATATAGCTATCTGAACACACTAATACATTGGTcagatacgtctctctctctctctctctctc
>TU254036
CGTGTCTGAAGTGTGAAAGTGAGCATGTTATCAGCGGTCAAAGGAAGAGGCTAgttttccattccatccattcatAGCGCAACCGCTCATAACGTGCACTGACGCATAGGCGAGATAGGgatcagcgagagagagacagagagagggttggattagGGCACTCACAGCCACCTCAGTCAAACAGTTGAGAGACACACGGTCACAACCTGCTGAGGGGGCAAAACTAACGGGACCGGAAAGTCTAAATCCAATCCAGATCACCTCTTAACCGGTTAGGGAGAGGGGACCACCGACCACCTCGAGACCCCGCACTGATTGAAAAGAGGGCAGAGTTGGAGAGTAAAACAATCCGTTTTGAAAAATTATTCAAATTGATCTATCCAGCCACCCTATACTCTGAACCATGGAGCGCAAAATCCCTGACTTCGCTGGTACCTGGAAGATGAAGAGCTCAGAGAACTTCGAGGAGCTTCTCAAAGCGCTGGGTGAGTgatggtaatgatggtggtggtgatgatgatgatggcgatGAAGGGGATGGTGGTAAATATTTGTGGTACATATATCCCTAACTTTATTCTAGCCTATTATTCTAGCAGTTATTTAATTATTACTGATTGAATATAGCTATCTGAACACACTAATACATTGGTcagatacgtctctctctctctctctctctc
>TU254035
tccattcatAGCGCAACCGCTCATAACGTGCACTGACGCATAGGCGAGATAGGgatcagcgagagagagacagagagagggttggattagGGCACTCACAGCCACCTCAGTCAAACAGTTGAGAGACACACGGTCACAACCTGCTGAGGGGGCAAAACTAACGGGACCGGAAAGTCTAAATCCAATCCAGATCACCTCTTAACCGGTTAGGGAGAGGGGACCACCGACCACCTCGAGACCCCGCACTGATTGAAAAGAGGGCAGAGTTGGAGAGTAAAACAATCCGTTTTGAAAAATTATTCAAATTGATCTATCCAGCCACCCTATACTCTGAACCATGGAGCGCAAAATCCCTGACTTCGCTGGTACCTGGAAGATGAAGAGCTCAGAGA
>TU254037
CGTGTCTGAAGTGTGAAAGTGAGCATGTTATCAGCGGTCAAAGGAAGAGGCTAgttttccattccatccattcatAGCGCAACCGCTCATAACGTGCACTGACGCATAGGCGAGATAGGgatcagcgagagagagacagagagagggttggattagGGCACTCACAGCCACCTCAGTCAAACAGTTGAGAGACACACGGTCACAACCTGCTGAGGGGGCAAAACTAACGGGACCGGAAAGTCTAAATCCAATCCAGATCACCTCTTAACCGGTTAGGGAGAGGGGACCACCGACCACCTCGAGACCCCGCACTGATTGAAAAGAGGGCAGAGTTGGAGAGTAAAACAATCCGTTTTGAAAAATTATTCAAATTGATCTATCCAGCCACCCTATACTCTGAACCATGGAGCGCAAAATCCCTGACTTCGCTGGTACCTGGAAGATGAAGAGCTCAGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254034 False 617 lncRNA 0.46 1 9071936 9072552
TU254036 False 683 lncRNA 0.40 1 9071936 9072618
TU254035 False 392 lncRNA 0.50 1 9072161 9072552
TU254037 True 458 lncRNA 0.50 1 9072161 9072618

Neighbor

gene id symbol gene type direction distance location
LOC110520814 LOC106595728 coding downstream 21074 8988084 ~ 9050862 (-)
LOC110520856 LOC106591015 coding downstream 89653 8973956 ~ 8982283 (-)
LOC100136250 LOC100136250 coding downstream 122757 8938820 ~ 8949179 (-)
LOC110520883 LOC100136250 coding downstream 150878 8912439 ~ 8921058 (-)
LOC110520884 LOC100136250 coding downstream 184283 8878988 ~ 8887653 (-)
LOC110501040 LOC106605812 coding upstream 28807 9101425 ~ 9118437 (-)
LOC110500119 LOC105018975 coding upstream 49604 9122222 ~ 9150991 (-)
LOC110508553 LOC105018974 coding upstream 88365 9160983 ~ 9231958 (-)
LOC110508538 LOC106594717 coding upstream 160831 9233449 ~ 9333337 (-)
LOC118945333 NA coding upstream 247028 9319354 ~ 9389195 (-)
G222453 NA non-coding downstream 2715 9068833 ~ 9069221 (-)
G222451 NA non-coding downstream 7088 9064560 ~ 9064848 (-)
G222448 NA non-coding downstream 14363 9056942 ~ 9057573 (-)
G222442 NA non-coding downstream 20328 9051394 ~ 9051608 (-)
G222455 NA non-coding upstream 990 9073608 ~ 9073826 (-)
G222464 NA non-coding upstream 19740 9092358 ~ 9093122 (-)
G222425 NA non-coding upstream 25345 9097963 ~ 9098998 (-)
G222467 NA non-coding upstream 34892 9107510 ~ 9107836 (-)
G222423 NA non-coding upstream 46222 9118840 ~ 9121329 (-)
G222023 LOC100136250 other downstream 122749 8853817 ~ 8949187 (-)
LOC110520835 ash1l other downstream 250869 8804651 ~ 8839679 (-)
G221986 NA other downstream 308052 8763119 ~ 8763884 (-)
G221807 adar other downstream 548728 8503184 ~ 8523208 (-)
G221806 NA other downstream 661127 8394361 ~ 8410809 (-)
G222465 NA other upstream 20562 9093180 ~ 9095216 (-)
G222607 LOC106574954 other upstream 422178 9494796 ~ 9496853 (-)
LOC110508584 LOC104949237 other upstream 458556 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 other upstream 489127 9559133 ~ 9594654 (-)

Expression


Co-expression Network