G222107


Basic Information

Item Value
gene id G222107
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9123213 ~ 9124886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU253598
tcccagtctctctcctccaccctcccacccctcctctcccagtctCGCTCCTCCAGGATGCGTGTTCAGTGCTGTAATGGTTGTATATGTAGTGTTGTCAGGATGTGTGTTCAGTGTTGTCAggatgtgtgtgtagtgttgtcaggatgtgtgtgtagtgttgtcaggagggatgtgtgtgtgtagtgttgtcaggagggatgtgtgtgtgtagtgttgtcagggtgtgtgtgtgtgtgtgtgtagtgttgtcagggtgtgtgtgtgtgtagtgttgtcaaggtgtgtgtgtgtgtatagtgttgtcagggtgtgtgtgtatagtgttgtcagggtgtgtgtgcagTGTTGTGTACATACATCGCTGCTCAGGAAGCGGACGGCCATACGCAGAATGAGGATGGCCCAGAAGATATGGAGACACTGCAGCACCATCATAAGGAAATTCAGGAAGTAGTATCCAAAGAACGGAGAGTACATAGTCATTGGATAAATGTACGTAGAATAAATgatgctgagagagaggaggggggggggggcaagaagAGCAATAACATCAGTAACAACCAACAGACAATTAACAGACATTTATGATGCTAATCAGAATTTGTtgttcactgacttgcctagttaaaggttacataagtaaaacaatcagaatggctGTGAGAGACAGATCATTGGTGTGTGGTGGGAGTGTTCAGGTGTCATCTCACTAGAAGGGGAAGATATAGAGTCTAGTGAAGATGAAGACGGCAGCGAAGAGGAAGAAGACGTAGTTACTGGTGTTTCTCCATCCAGCATAGATGAATATCTTAGCGGactttaagagagagagaaaggttgttgttagaaaataattgTAATGTCATATTTCTTCCACCAGGTGACAGTACTAAATAATCTCCATATCTCCACTTCTCCAATATCAGTAGTACTTTGTCCACTTCCTGGTTTATCAAATAAAATGGGATTTCCTTGTGGGTGATTCCCCTGTGGGCCCCACCTACAAACTACATGTGCTAACTGTATTATTGTGTTTATTATCGTATCATGGCAGTGATATTATTATCATGTTATGTTGGTGACCCAGCTCTCCTGTAATTGGTTGTACCTCCAGTAAATAGTCGGAGGAGTCGTGCAGCAGCATGATGAGCGTGCCCGCTCTGATGTAGTTGACACACCAGGAGAAACTGATGAGGAAGATGGTGGCCATATGGTGAACCATCTGCTCCTTAAAGTCCTacacagaggaagggagggagagaaggagggaaagagagaaatgcagggagggaaagagaaggttAGAGTT

Function

NR:

description
LAG1 homolog, ceramide synthase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253598 True 1315 lncRNA 0.45 2 9123213 9124886

Neighbor

gene id symbol gene type direction distance location
LOC110520813 LOC106605815 coding upstream 135367 8982594 ~ 8987846 (+)
LOC110517169 LOC106605893 coding upstream 184515 8932771 ~ 8938698 (+)
LOC118945318 LOC106575331 coding upstream 197156 8898021 ~ 8926057 (+)
LOC110520801 LOC106605893 coding upstream 210903 8906566 ~ 8912310 (+)
LOC110516768 LOC106605893 coding upstream 244560 8865764 ~ 8878653 (+)
LOC110520819 LOC106575022 coding downstream 338451 9463337 ~ 9483086 (+)
LOC118944441 NA coding downstream 360714 9485600 ~ 9486125 (+)
LOC110520820 LOC107573682 coding downstream 365447 9490333 ~ 9508263 (+)
LOC118945352 NA coding downstream 488008 9612894 ~ 9622952 (+)
LOC110536529 LOC106573824 coding downstream 564178 9688881 ~ 9692007 (+)
G222103 NA non-coding upstream 720 9121787 ~ 9122493 (+)
G222104 NA non-coding upstream 1873 9118845 ~ 9121340 (+)
G222123 NA non-coding upstream 15511 9107502 ~ 9107702 (+)
G222122 NA non-coding upstream 16080 9106840 ~ 9107133 (+)
G222121 arnt non-coding upstream 16979 9106017 ~ 9106234 (+)
G222182 NA non-coding downstream 113500 9238386 ~ 9238784 (+)
G222194 NA non-coding downstream 127972 9252858 ~ 9265713 (+)
G222202 NA non-coding downstream 158272 9283158 ~ 9283409 (+)
G222204 NA non-coding downstream 160577 9285463 ~ 9286105 (+)
G222208 NA non-coding downstream 168755 9293641 ~ 9293907 (+)
G222102 NA other upstream 55062 9067146 ~ 9068151 (+)
G222089 NA other upstream 87380 9035358 ~ 9035833 (+)
G221526 LOC106591640 other upstream 214485 8840224 ~ 8908728 (+)
G222287 NA other downstream 320161 9445047 ~ 9445704 (+)
G222345 LOC106594812 other downstream 481419 9606305 ~ 9611139 (+)
G222353 LOC106573525 other downstream 554874 9679760 ~ 9681752 (+)
sphk2 LOC106605743 other downstream 778226 9900809 ~ 9916529 (+)

Expression


Co-expression Network