G222505


Basic Information

Item Value
gene id G222505
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9441801 ~ 9444852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU254122
acgtgggagaacttgcacaattggtggctgactaaattcttttttgccccactgtatatatgacaTTGATTTTAGCGTTGCCAAATTGGCTTAGTCTCGTAGTGAGGAGCCTATAAAACCTAGCTAGCTTCATAAACATTTTTGGGAATTCTGAAATGTATTGCAATAAATGACCAAACTAtaaaactagctagccagctatggataactgtagctagctagctacgttagcttGCTAGATACATAAATAGCTGTGGATTGGTTGTTTTTAAGCTCAACTTCAATATTTCCACTAAGGATGTTGCCTCCGATCATCACTCTCTAATTTGAATTTGGACTGCAGCCATGGGTTTAGGTGCTGATGAGTTTCCTTAATGATGGATCTTTTGCAACTACCTAAACGCAATTAGGACCATTAATGAAAATGATATCTGAGAGACTACAGTTATTACAACGAGGGCAGAATGTGTCCTTGTGAATCATAATCACAGTTCCATAACAATCAGATTTTTTTGCACAAATAGTGGTTGTAGATTGGAAGGTTGGTAAGCACCTCTTATAGCCCATCGCTTGTTTATAGAATATTGGATCTCTGATTGACCGAATGGTATACTCTCTTACTCCACTTAAGAAAAGGTAAATGCCACTATGCAAATTTAATCGAAACGCTGTTGGCTTAGGAATATTTGGGATTCAGGTGGTTGGAGGCAAGGAGGTGACGAGGAGAGGATGGTTAGAAGGACAGGTGGAATAAGATTTGGGGATTAAGGATAGTTATATTCCTGGAATCTCCTCAGAGATGATGCTTCCAGTGaataacagcagacagacagttcaaTAGACCGAGGCATTACGGATAGAAGTGAGGAATAATCATTAGACTACTGAATGACCTCTAGAGCTGAATAACATCTAAGAGGACGTGGCAGGGACCTCTACTGAAGTCTAAAGAGGTTTAGAATCGATTCAATGTCAATCCGTCAACATGACACAATCTGTTTGTGAAGACGAATGCAAGGTGTTTTGGGCGAAGATCAATTATGACTGTGAAACGAATGAACCACAACTGGGTTTTATTCTGTGTGGAGAAATGTGAAGCGGGTTATCCGTTAAACAGTAAATCACATTTCAATGGCCTAACCGGTAGGGGATAGAATACCAAACAGACCTTAGATCAGCTTCTAGGGACAACTTAATCCTTTAAATGGCTCAGTGAGAGACTCTAAAGACCACCCTGAGAGAAGAGtccactcacagacagacagagacagacatcctGTTTATTTATTCACATGTTGACTTGACAACGCTGCATTtatttattacctttatttattaATTGGCAGCTGTGTTTCTCTCTTTGAACTTACAATTGGTtgactgattggttgactgaTGCTCTTGGGAAAGTTGCTGTACAGCGGTTTGTTTGTGGTTTTTACTGTTATGATGGGacaaatttttttgggggggatgatTGGACCTTTGGACTATTGTGCCTTTACCAAATAGGATGTGTACAAAAAACAAAGCATTTTCTACTGCATTTTGATAGTTTGCTTGTCTTTCTTAATAGCACAGTGCACAATCAGTCGAATAACACAGTACACAACGCCTAATTCCTGCCTTCAATCTCTTATCTGGCTTCCAGGGGTCTGTTGGGCAAAACTAGCTACCTACAGATCCCACAACAGCAAGGCAACCTCTACTCCAAGCTGTGCAGTGGTCATGTGTACAACACAATAGTATTCTATACATATACATCGTAGTCTTCTATGAACTAACGACAGTGGctaatttatttcagtttttagaTTGGCAGTTGCCTCTTCTCCTGGGTGTATTTTATAGTTGATTATATAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGTGTGCTTCTTGGCGCTCGTCAAACTTGAAAAACGTGAGGATCAGAGCTAAAAGGGAGACAGTATGAATATTTATTTTGCACCATCATCGTAAGCTGCTATACATAATAGGACTAAAACATGATTGAAATATTCCTCATAACAAATCATTAATACACATGTATTTACTAATGAAACATATGCCATTCAGCAGAcgttttatccaaagtgacttaacAGTCATGTGTGAATAcatttttacatatgggtggtccctggaatcaaacccactatcctggcattgcaagcaccatgctctaccaactgagctccagAGGAAATAACTGGTGTACATGATACAGGGTTTACAAAGAGTTTACTTATACCTAATCAACTGTTTATATGCAGAGCTTCCAGTAAAGCACTGCTAAAACAAGTTCATATGGTTGCATCCATACTCCCTATAGCTTTCTCCAAGGAGAGCCACAACTGAACACACAATCACTGGTAGCCTCCATGTTACCTAACTACTGTCTTTACTTGGGGCAGGGGGATGTTTTTATGCTTGAGGTATAAGTTGCTCTTAACCACAGGTCTATGATCAGATTGTTCCTACCCCCAATCCTAACGTTTATCATTAGGGTTTGAAAACACACCTGACCCCGGGCCTGTGGTTAAGGGCCACTTCTACCTACTTGTGTTTTTTATACAGCTATTTTGTGACAGAGAAACTGATTGCACAGATTTTTGTGATCTCTTTTCCATGTATGTTTTCTACTGCAGAGACCACCGCTGATTGGTCAGAAATAATATGTCTTGTTTATTTCAACTGCCTTTTTATATCTTAGTAGATGCTGTACTCaccccctctactcctccctcctcccctctatccttctccctccatcctccc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU254122 True 3052 lncRNA 0.40 1 9441801 9444852

Neighbor

gene id symbol gene type direction distance location
LOC110508575 prpf3 coding downstream 40679 9390287 ~ 9401122 (-)
rprd2b LOC106605802 coding downstream 51529 9376499 ~ 9390272 (-)
LOC110520816 LOC100380759 coding downstream 69867 9347151 ~ 9371934 (-)
LOC110508538 LOC106594717 coding downstream 108464 9233449 ~ 9333337 (-)
LOC110508582 LOC106575046 coding upstream 1412 9446264 ~ 9451249 (-)
LOC110508594 LOC106605789 coding upstream 71056 9515908 ~ 9525313 (-)
LOC110508584 LOC104949237 coding upstream 84022 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 coding upstream 114281 9559133 ~ 9594654 (-)
LOC110536519 LOC106573729 coding upstream 158349 9603201 ~ 9641233 (-)
G222586 NA non-coding downstream 17336 9424179 ~ 9424465 (-)
G222582 NA non-coding downstream 30098 9411477 ~ 9411703 (-)
G222579 NA non-coding downstream 35119 9406376 ~ 9406682 (-)
G222576 NA non-coding downstream 36914 9404667 ~ 9404887 (-)
G222574 NA non-coding downstream 39242 9402137 ~ 9402559 (-)
G222511 NA non-coding upstream 185 9445037 ~ 9445702 (-)
G222600 NA non-coding upstream 29188 9474040 ~ 9476900 (-)
G222607 LOC106574954 non-coding upstream 50974 9494796 ~ 9496853 (-)
G222657 NA non-coding upstream 150168 9595020 ~ 9595330 (-)
G222658 NA non-coding upstream 150853 9595705 ~ 9599657 (-)
LOC110501040 LOC106605812 other downstream 323428 9101425 ~ 9118437 (-)
G222465 NA other downstream 346585 9093180 ~ 9095216 (-)
G222023 LOC100136250 other downstream 492614 8853817 ~ 8949187 (-)
LOC110520835 ash1l other downstream 620734 8804651 ~ 8839679 (-)
G221986 NA other downstream 677917 8763119 ~ 8763884 (-)
G222662 NA other upstream 172773 9617625 ~ 9622934 (-)
LOC118944443 LOC106573533 other upstream 227591 9665862 ~ 9673439 (-)

Expression


Co-expression Network