G222607 (LOC106574954)


Basic Information

Item Value
gene id G222607
gene name LOC106574954
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9494796 ~ 9496853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU254242
GGAGGGtgtaggagggatggaggagggtggggagaggggatggggggaTTTAGTGGGGGTCCCACTGGGGGTTATGGTGTTCCCCCCACTGTGATACTGGACCACGGGGCCCTTGGTCCTCAAtgctcccatgctggggcgTGTCCTCTGCTGGCCAGCCATCTTCTTCTCCTGGGTGTTGGCACAGTTGGTCTTCAGGTTGAACATGGGCTCCAGCCTGGTTGAACCGCGGTAGATCCACTCACTACGCTTGTCATCCAGGAAGAGGATCTTGACGAGGCTGCCGTCCACCTCCTCCACTCTGCTCCTCCACCACgtcccctcccactctgtcttgaTGACCTGGCCTGCCTTCAGCAGCACCATGGGCCTGTTGGGGTATGATGTTATATATTCCTCTATGAAGTCTTTACACGATGCATCCTCTATGTCCTCCCATGTACGCTTCATTGGTCTGCAGACAGGATAGAGCTCAGGCAGGGTCACGTAGGAGGCATAACCGTCGTCAAAGAAGATCAGGAACCTCATGCGGTTCTTGTTGTTGGGCATCTCTGCCACGATGCCAGCGTAGAGCCAGACCTGGTTGCCGTCCTTGTACTTGGCGACCACCCTGGCTCCCACGTATAGCCTCTCCAGGGTGGGGTGGTAGTGAAACGCTATGTGGTTCCCAGAGAGTAGACTCTTCCCCTTGTTCTCAAACTTTACCTTGTACTTACTGTAACCAttacCGACAGGGTTGATGGCGATGAGCATTCCACTGTGCCAGGTCTTGGTGCGTTTCTTTCCCAGAAGACTCATCTCCAGTCTGATTTCATCATCCTTCAGGGAGGGGTTAGGCTGGGTGGGTGTGTTCCTGGGTGTGGCCTGGGACACAAACACTGCTGGCATGGGCACTGGGCCACCTACACAAAATAAAGAATGCATGTGCACGTTTGTgcagtatgtacacacacaaagacactgcCATGACCCGGAGGTATACATCAATCACAGACATAGAATTGCACATTGGTGCCATTACCTGTCTGTTGTATAGCAGGCCCGGAAGAAGAGTTCTTGTTGACTGTCTGGGCCAGCTTCAACACCTGCTGGGAGGAACGCTGGAGAGCTGCCGACGCCTCCTTAA
>TU254246
GGAGGGtgtaggagggatggaggagggtggggagaggggatggggggaTTTAGTGGGGGTCCCACTGGGGGTTATGGTGTTCCCCCCACTGTGATACTGGACCACGGGGCCCTTGGTCCTCAAtgctcccatgctggggcgTGTCCTCTGCTGGCCAGCCATCTTCTTCTCCTGGGTGTTGGCACAGTTGGTCTTCAGGTTGAACATGGGCTCCAGCCTGGTTGAACCGCGGTAGATCCACTCACTACGCTTGTCATCCAGGAAGAGGATCTTGACGAGGCTGCCGTCCACCTCCTCCACTCTGCTCCTCCACCACgtcccctcccactctgtcttgaTGACCTGGCCTGCCTTCAGCAGCACCATGGGCCTGTTGGGGTATGATGTTATATATTCCTCTATGAAGTCTTTACACGATGCATCCTCTATGTCCTCCCATGTACGCTTCACTGGGGGAGAAAATAtgatggggagaggaagaggagagatgaggagagatggggagaggagagatggtgagaggagacaatgggggag

Function

NR:

description
histone-lysine N-methyltransferase SETDB1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254242 False 1126 TUCP 0.37 6 9494796 9496853
TU254246 True 537 lncRNA 0.35 3 9495826 9496853

Neighbor

gene id symbol gene type direction distance location
LOC110508582 LOC106575046 coding downstream 44577 9446264 ~ 9451249 (-)
LOC110508575 prpf3 coding downstream 94704 9390287 ~ 9401122 (-)
rprd2b LOC106605802 coding downstream 105554 9376499 ~ 9390272 (-)
LOC110520816 LOC100380759 coding downstream 123892 9347151 ~ 9371934 (-)
LOC118945333 NA coding downstream 173458 9319354 ~ 9389195 (-)
LOC110508594 LOC106605789 coding upstream 19055 9515908 ~ 9525313 (-)
LOC110508584 LOC104949237 coding upstream 32021 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 coding upstream 62280 9559133 ~ 9594654 (-)
LOC110536519 LOC106573729 coding upstream 106348 9603201 ~ 9641233 (-)
cyp11b cyp11b coding upstream 144785 9641638 ~ 9653952 (-)
G222600 NA non-coding downstream 18926 9474040 ~ 9476900 (-)
G222511 NA non-coding downstream 50124 9445037 ~ 9445702 (-)
G222505 NA non-coding downstream 50974 9441801 ~ 9444852 (-)
G222586 NA non-coding downstream 71361 9424179 ~ 9424465 (-)
G222582 NA non-coding downstream 84123 9411477 ~ 9411703 (-)
G222657 NA non-coding upstream 98167 9595020 ~ 9595330 (-)
G222658 NA non-coding upstream 98852 9595705 ~ 9599657 (-)
G222661 NA non-coding upstream 115811 9612664 ~ 9623056 (-)
G222662 NA non-coding upstream 123358 9617625 ~ 9622934 (-)
G222672 NA non-coding upstream 140396 9637249 ~ 9637907 (-)
LOC110501040 LOC106605812 other downstream 377453 9101425 ~ 9118437 (-)
G222465 NA other downstream 400610 9093180 ~ 9095216 (-)
G222023 LOC100136250 other downstream 546639 8853817 ~ 8949187 (-)
LOC110520835 ash1l other downstream 674759 8804651 ~ 8839679 (-)
G221986 NA other downstream 731942 8763119 ~ 8763884 (-)
LOC118944443 LOC106573533 other upstream 175590 9665862 ~ 9673439 (-)
LOC110534283 LOC106573819 other upstream 183055 9679758 ~ 9689081 (-)
LOC110508538 LOC106594717 coding downstream 161459 9233449 ~ 9333337 (-)

Expression


Co-expression Network