G222388


Basic Information

Item Value
gene id G222388
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9702008 ~ 9702574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU253938
GTCATTAagttttcaacccctttgttatggcaagcctaaataagttcaggagtaaaaatgtgcttaacaagtcacataataagttgcatggaataATTGtgtttgacatgatttttgaatgactacctcatctctgtaccccacacatacaattatctgtaaggaccctcagtcgagcagtgaatttcaaacacagattcaaccacaaagaccagggaggttttccaatgcctcacaaagaagggcacctattggtagatgggtataaaaaaacacacaaaaaaacagacattgaatagtcctttaagcatggtgaagttattcattacagtttggatggtgtatcaatacacccaatcactacaaagatacaggtatccttcctaactcagttgccagagaggaaggaaacctctcagggatttcaccataaggccaatggtgatttttaaaacagttgcagagtttaatggctgtgataggagaaaactgaggaaggatcaacaacattgtagttattccacaaatctaatctaaatgacagagtgaaaagaaggaagcctgtac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253938 True 567 lncRNA 0.38 1 9702008 9702574

Neighbor

gene id symbol gene type direction distance location
LOC110536529 LOC106573824 coding upstream 10001 9688881 ~ 9692007 (+)
LOC118945352 NA coding upstream 79056 9612894 ~ 9622952 (+)
LOC110520820 LOC107573682 coding upstream 193745 9490333 ~ 9508263 (+)
LOC118944441 NA coding upstream 215883 9485600 ~ 9486125 (+)
LOC110520819 LOC106575022 coding upstream 218922 9463337 ~ 9483086 (+)
LOC110536497 LOC106574921 coding downstream 22801 9725375 ~ 9764307 (+)
LOC110508601 LOC105018956 coding downstream 66226 9768800 ~ 9882291 (+)
LOC110520822 LOC106605747 coding downstream 184297 9886871 ~ 9888193 (+)
LOC110508611 rpl18 coding downstream 190687 9893261 ~ 9900476 (+)
sphk2 LOC106605743 coding downstream 198235 9900809 ~ 9916529 (+)
G222354 NA non-coding upstream 18880 9681972 ~ 9683128 (+)
G222381 NA non-coding upstream 22713 9679029 ~ 9679295 (+)
G222366 NA non-coding upstream 32948 9646171 ~ 9669060 (+)
G222371 NA non-coding upstream 44995 9656420 ~ 9657013 (+)
G222723 NA non-coding downstream 63347 9765921 ~ 9767809 (+)
G222741 NA non-coding downstream 103992 9806566 ~ 9807900 (+)
G222743 NA non-coding downstream 105465 9808039 ~ 9809141 (+)
G222746 NA non-coding downstream 120144 9822718 ~ 9824032 (+)
G222752 NA non-coding downstream 141647 9844221 ~ 9846407 (+)
G222353 LOC106573525 other upstream 20256 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 90869 9606305 ~ 9611139 (+)
G222287 NA other upstream 256304 9445047 ~ 9445704 (+)
G222102 NA other upstream 633857 9067146 ~ 9068151 (+)
LOC110508845 LOC106605771 other downstream 571551 10267749 ~ 10276176 (+)
LOC110508886 LOC106605776 other downstream 609108 10306848 ~ 10314535 (+)
LOC110520833 LOC106575226 other downstream 1014077 10716613 ~ 10767669 (+)
cacng8b LOC106576929 other downstream 1067099 10769638 ~ 10827279 (+)

Expression


Co-expression Network