XLOC_021843


Basic Information

Item Value
gene id XLOC_021843
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35484894 ~ 35487575 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044866
GCCAGAGAAAACTACCATTTATTGCAAGGCTAAAGTTCCACTCACTATTGATACAGTATATTGACCTTTTTACAGTTTCTTTATTTGACATCTGACACATATTTGTGTCAGGTAAAACCCCACCCAGATGAAAGTCTAAACTGAGCTGCAGAATACTTGCCAATAGAAAATGGCAAGCATTGAGACACAACCATCAAAGTGAATGTTACATTAAAAACACTGTAATAACAGTTTCTGAATTCTACATATAGAAAGTTAACAATAAATCTGCCTTGTAAGGTGTCAGAAAACATCACAGATGTACAGTAAGTAtaagcttaaatgtaaaaaaaatcattctagCATGCATTCAGGAAAGAATGCATGTCCAAAATCATTTAAAGTAGTGTAAAGGCCACAAACACTCCCTCTGCAAGATCTAACCTGCCCTGCAGTCTGCATTTAAGAGGCCAGAGGGGTAAGTTTTCGTGTGCATGTGAAAACACTGCACAGATTGGTTAAAGAACTTGCCAAAAATTCAGTCATGTGCAAAATTATGAACACACACACTAAGTTAACATTTGTAAAACCTGtatattttcattataaaatatgaaagtattgtatataaaataatatctgCTTTTAAGTCAGCAAAGCTAAATCAAAAACAGTCTTATAACAGTAACTGCTCtggaaaagtttaaaaaaatgaaaaattaatattttacacacTATGTCAGGCAGTCTGATGAAGTAATCAAACACCCTTTCAATGTACAGTGAGTGAGGAAGGTACAGATAACAGTCAGTCAGGATAAACAGACACTTATCTTTGAACTGAAGTGACAATGGCACAATTTATACACACCCACGCTGGGTGTGAATGTCCTTGTTTTTTGTTCACCATTTCCGTTGTTACCCAACAATAGACAAAACTGCAAATCTGAAGCCCTATTTATAGGCCACCTCTGCAATCCAAAGCTGGCAGGGTTGTATGATGGTTTAAAGCCAACAATTGTCTCTGTAAACTGTGCAAAGccagtttttacatttaacagAGAACTAAAATGCAGGAAGGGCTGTATAACTGACTGTTAATACAGTATAAATCAAGTAACACGATATCTCTCAGTAGATATAATAGAATACTTTCCAGGATCAAGTACTGGCATGACGAAAAGGCTTATCGAAAAGTGGCTTGTAACAATACAGCACTTTAAGGCCCTAAAAACTGAGCTTCGGGATCCCTCTGGACTTTCCCATAGGGTTTTTTTAAATGGTGGTTTTGGATTTACGAGTAAAATAAAGCctaaagttagtatttttttaataaatgttcatgTCAACATACATTACGCAAACTGTGCTATAAATAAAGAGTACTATACCACCAAAAGGATGTGTACATGCTTGACGAACACtacagtttcaagagttcacacttagctgatgattaattataaaagcttgtttggcatgctgtcccgggagagagtcctgagctcatgagatcctcgagcccagggctccctcccgttgcaaggcgggaggggagtttgagctcaggtagatctcgagaactcccctgctgtagcaagtgattGTTCTTGAAAATAAC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0051716 cellular response to stimulus biological_process
GO:0023052 signaling biological_process
GO:0007154 cell communication biological_process
GO:0007165 signal transduction biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0001653 peptide receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044866 True 1600 lncRNA 0.37 2 35484894 35487575

Neighbor

gene id symbol gene type direction distance location
XLOC_021841 CU459147.1 coding upstream 276508 35195740 ~ 35208386 (+)
XLOC_021840 CHST13 coding upstream 459777 34990693 ~ 35025117 (+)
XLOC_021838 CR352218.1 coding upstream 497531 34849715 ~ 34987363 (+)
XLOC_021839 NA coding upstream 536395 34946447 ~ 34948499 (+)
XLOC_021837 NA coding upstream 716542 34764943 ~ 34768352 (+)
XLOC_021844 acp1 coding downstream 17249 35504824 ~ 35537727 (+)
XLOC_021845 NA coding downstream 69615 35557190 ~ 35560512 (+)
XLOC_021846 ccnt1 coding downstream 163196 35650771 ~ 35664505 (+)
XLOC_021847 pmelb coding downstream 184967 35672542 ~ 35690336 (+)
XLOC_021848 NA coding downstream 206697 35694272 ~ 35702721 (+)
XLOC_021833 AL954678.1 non-coding upstream 1482021 34002757 ~ 34002873 (+)
XLOC_021851 NA non-coding downstream 235863 35723438 ~ 35727522 (+)
XLOC_021852 NA non-coding downstream 241680 35729255 ~ 35730062 (+)
XLOC_021854 BX465853.1 non-coding downstream 303233 35790808 ~ 35798279 (+)

Expression


Co-expression Network