G222723


Basic Information

Item Value
gene id G222723
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9765921 ~ 9767809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU254391
gagattctatatgtaatgaatgaatagattctatatggaatgaatgaatagattctatatgtaatgaatgaatagattctatatggaatgaatgaatagattctatatgtaatgaatgaatagattctatatgtaatgaatgaatagattctatatgtaatgaatgaatagattctatatgtaattgtGTGATCATGTGAACATAGGAGGTCCCATACTGAGAAGAAATGACATCTACTTTcacccgtgtgtgtgtgactgtgagagtGAAGTCCTGTGTCTCACTCATCTCAATAACTGCAGTGCTACTCGTGGTAACGTCATTTAGCAGAGTTTACCTTTAAGGTACATTGTTGGAAGTGTCCAGTCCTTGGCAGAGCACCCTAAACTGGGACTGGAAATGGACCGTAAACCTGTTGGACTGCCATGACCACCATGTACTGAGGACCTGAAACGTACAACTGTCACTTCACTGCAGTACATTTACGTAAGGAAAACCTCCCTGACCACTCCCTATAGCTTCCTGTTCTTATTGTAAACTGTGAGGGCTCACAACTGCACTGGCAAACCACCTGAGGAGGAATTGAATTTCTGTGACATTCTGTTCTCTGAGAGAGGTTCTGTTCAAAGAATTAGAATGGATGACTAATCCTGAATTCTATGATTCTGCTTTGGTTGGTGTCTGTCTCCCACTATGTGGAAGACTAATGCATTGGGCGGTGCCTTCAAAAAGAAGTCTATGGTGTTATTCTATAACTAGCACAAGATTTGCAATGTTCAAATTAGATGTTTTTATTGCCTGTCTATTTTGTTGAATCGTGTAACTCTTCTGAAAGTGATGGTTTCTGAAATATGTATACTGATGTTATTGAGAGATGAAGACTTCTAACTTCTATGCCGCTACTACCACAATATTTAgtcacactttacattaagttaaaCTGCCATGTGTGGTATTACATAATAACTAAGTCATTATTTCAAATAGAATCTATTCAGTTTCCTTTTTCAGTATTACAATTCAAAATCATTGGGTTATGCACCTTACCAGCAGATACCATGCACAATATATCATGAATCTACATGATATGTAAAGTGTTGAACAATTGTCTTGACCACTAGATGATACAACAGGGCTGTAAATGTTCTACCTACTACAAGGACAGACAACTCTGAAACTTTGACTTGCATCTTTGCACAGAAGTAAGTTGACACTATGGACACTACGTACATACAAAGCACTGTAAAAGCACACAAACTGCTATTGAAATGGCATTTTAAGAcgtcacatactgtatatagaaagAAGCacttcacacacactgaccttttGAACAGGAAACATGGATATTTCACCTTTTAAAGCAGATTCCATGATATGATTTACAACCATATTGATCGGTTATAGTTGGTGTTATTGACATTTATTCAATTTCCGTGTCTTTCCTTATTTTTCTATGTCTCCATTGCCACCGAGTTCTATTTATAGGTTAATGGCCAGTCCTGTCTGCTCCACTTCCTGTGGGGGGGTAACTTGAACCCTGACCACCAGGACTCTGACCTCTGTGttagtcttttttttttacgcatcccacacaacaacaacatagccAGATGGATTACTTGATGACTTCCTGGTTGGTTGCTTTATTAGATTCCAGAATAAAATTGTGATATTGCAGGTCAAGGTATGTTGGGATGTATGTTAGTGGAATCAGGTTGTTACTAGCTGTGCTCTATTATTTTTTTCTACAGATACCACTGTATTCGTTTCCCATCCTTCTCTGTTGTATCACAAAAAAAGCACTACTGTTTGTGGCAGAAAGCACTTCCATGTGAAAAAGAATGGCACTGTAGAGCAAATAAAACACATTGATTGATATGAGTCA
>TU254390
tgaatagattctatatgtaatgaatgaatagattctatatgtaatgaatgaatagattctatatgtaatgaatgaatagattctatatgtaattgtGTGATCATGTGAACATAGGAGGTCCCATACTGAGAAGAAATGACATCTACTTTcacccgtgtgtgtgtgactgtgagagtGAAGTCCTGTGTCTCACTCATCTCAATAACTGCAGTGCTACTCGTGGTAACGTCATTTAGCAGAGTTTACCTTTAAGGTACATTGTTGGAAGTGTCCAGTCCTTGGCAGAGCACCCTAAACTGGGACTGGAAATGGACCGTAAACCTGTTGGACTGCCATGACCACCATGTACTGAGGACCTGAAACGTACAACTGTCACTTCACTGCAGTACATTTACGTAAGGAAAACCTCCCTGACCACTCCCTATAGCTTCCTGTTCTTATTGTAAACTGTGAGGGCTCACAACTGCACTGGCAAACCACCTGAGGAGGAATTGAATTTCTGTGACATTCTGTTCTCTGAGAGAGGTTCTGTTCAAAGAATTAGAATGGATGACTAATCCTGAATTCTATGATTCTGCTTTGGTTGGTGTCTGTCTCCCACTATGTGGAAGACTAATGCATTGGGCGGTGCCTTCAAAAAGAAGTCTATGGTGTTATTCTATAACTAGCACAAGATTTGCAATGTTCAAATTAGATGTTTTTATTGCCTGTCTATTTTGTTGAATCGTGTAACTCTTCTGAAAGTGATGGTTTCTGAAATATGTATACTGATGTTATTGAGAGATGAAGACTTCTAACTTCTATGCCGCTACTACCACAATATTTAgtcacactttacattaagttaaaCTGCCATGTGTGGTATTACATAATAACTAAGTCATTATTTCAAATAGAATCTATTCAGTTTCCTTTTTCAGTATTACAATTCAAAATCATTGGGTTATGCACCTTACCAGCAGATACCATGCACAATATATCATGAATCTACATGATATGTAAAGTGTTGAACAATTGTCTTGACCACTAGATGATACAACAGGGCTGTAAATGTTCTACCTACTACAAGGACAGACAACTCTGAAACTTTGACTTGCATCTTTGCACAGAAGTAAGTTGACACTATGGACACTACGTACATACAAAGCACTGTAAAAGCACACAAACTGCTATTGAAATGGCATTTTAAGAcgtcacatactgtatatagaaagAAGCacttcacacacactgaccttttGAACAGGAAACATGGATATTTCACCTTTTAAAGCAGATTCCATGATATGATTTACAACCATATTGATCGGTTATAGTTGGTGTTATTGACATTTATTCAATTTCCGTGTCTTTCCTTATTTTTCTATGTCTCCATTGCCACCGAGTTCTATTTATAGGTTAATGGCCAGTCCTGTCTGCTCCACTTCCTGTGGGGGGGTAACTTGAACCCTGACCACCAGGACTCTGACCTCTGTGttagtcttttttttttacgcatcccacacaacaacaacatagccAGATGGATTACTTGATGACTTCCTGGTTGGTTGCTTTATTAGATTCCAGAATAAAATTGTGATATTGCAGGTCAAGGTATGTTGGGATGTATGTTAGTGGAATCAGGTTGTTACTAGCTGTGCTCTATTATTTTTTTCTACAGATACCACTGTATTCGTTTCCCATCCTTCTCTGTTGTATCACAAAAAAAGCACTACTGTTTGTGGCAGAAAGCACTTCCATGTGAAAAAGAATGGCACTGTAGAGCAAATAAAACACATTGATTGATATGAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254391 False 1889 lncRNA 0.47 1 9765921 9767809
TU254390 True 1797 lncRNA 0.38 1 9766013 9767809

Neighbor

gene id symbol gene type direction distance location
LOC110536497 LOC106574921 coding upstream 1614 9725375 ~ 9764307 (+)
LOC110536529 LOC106573824 coding upstream 73914 9688881 ~ 9692007 (+)
LOC118945352 NA coding upstream 142969 9612894 ~ 9622952 (+)
LOC110520820 LOC107573682 coding upstream 257658 9490333 ~ 9508263 (+)
LOC118944441 NA coding upstream 279796 9485600 ~ 9486125 (+)
LOC110508601 LOC105018956 coding downstream 991 9768800 ~ 9882291 (+)
LOC110520822 LOC106605747 coding downstream 119062 9886871 ~ 9888193 (+)
LOC110508611 rpl18 coding downstream 125452 9893261 ~ 9900476 (+)
sphk2 LOC106605743 coding downstream 133000 9900809 ~ 9916529 (+)
LOC110508641 LOC106577286 coding downstream 158474 9926283 ~ 9933661 (+)
G222388 NA non-coding upstream 63347 9702008 ~ 9702574 (+)
G222354 NA non-coding upstream 82793 9681972 ~ 9683128 (+)
G222381 NA non-coding upstream 86626 9679029 ~ 9679295 (+)
G222366 NA non-coding upstream 96861 9646171 ~ 9669060 (+)
G222741 NA non-coding downstream 38757 9806566 ~ 9807900 (+)
G222743 NA non-coding downstream 40230 9808039 ~ 9809141 (+)
G222746 NA non-coding downstream 54909 9822718 ~ 9824032 (+)
G222752 NA non-coding downstream 76412 9844221 ~ 9846407 (+)
G222753 NA non-coding downstream 76783 9844592 ~ 9849308 (+)
G222353 LOC106573525 other upstream 84169 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 154782 9606305 ~ 9611139 (+)
G222287 NA other upstream 320217 9445047 ~ 9445704 (+)
G222102 NA other upstream 697770 9067146 ~ 9068151 (+)
LOC110508845 LOC106605771 other downstream 506316 10267749 ~ 10276176 (+)
LOC110508886 LOC106605776 other downstream 543873 10306848 ~ 10314535 (+)
LOC110520833 LOC106575226 other downstream 948842 10716613 ~ 10767669 (+)
cacng8b LOC106576929 other downstream 1001864 10769638 ~ 10827279 (+)

Expression


Co-expression Network