G222982


Basic Information

Item Value
gene id G222982
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9836973 ~ 9838939 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU254694
aatatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaatatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaaggtgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaCCGTTCCAGtgaaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggagggatgataaagagaggaaggtGTTAAACCGTTCCAGtgaaagggaggagggatgataaagagaggaagatgtataccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaACCGTTCCAGtgaaagggaggagggatg
>TU254700
aatatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaatatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaaggtGTTAAACCGTTCCAGtgaaagggaggagggatgataaagagaggaagatgtataccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaACCGTTCCAGtgaaagggaggagggatg
>TU254695
aatatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaatatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaaggtgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaagtgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtcaaccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtataccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtataccgttccagtgtaagggaggagggatgataaagagaggaagatgttaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaagtgttccagtgtaagggaggagggatgataaaGAGAAGAAGATGTAAACCGTTCCAGtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagagaggaagatgtaaaccgttccagtgtaagggaggagggatgataaagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254694 False 761 lncRNA 0.45 2 9836973 9838939
TU254700 False 619 lncRNA 0.45 2 9836973 9838939
TU254695 True 1015 lncRNA 0.45 2 9837539 9838939

Neighbor

gene id symbol gene type direction distance location
LOC110536579 LOC106593149 coding downstream 123785 9708802 ~ 9713188 (-)
LOC110534283 LOC106573819 coding downstream 147892 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 coding downstream 163585 9665862 ~ 9673439 (-)
LOC118945353 LOC106594169 coding downstream 180062 9654293 ~ 9656911 (-)
cyp11b cyp11b coding downstream 183021 9641638 ~ 9653952 (-)
LOC110508630 LOC106605751 coding upstream 104142 9943081 ~ 9960032 (-)
LOC110508696 ndufa3 coding upstream 162506 10001415 ~ 10002941 (-)
LOC110508724 prpf31 coding upstream 180374 10019313 ~ 10024005 (-)
LOC110520824 lmtk3 coding upstream 185509 10024448 ~ 10047484 (-)
LOC110508742 LOC106577219 coding upstream 208696 10047635 ~ 10053368 (-)
G222961 NA non-coding downstream 27492 9802444 ~ 9809481 (-)
G222724 NA non-coding downstream 69164 9766126 ~ 9767809 (-)
G222665 NA non-coding downstream 101116 9732155 ~ 9735857 (-)
G222686 NA non-coding downstream 160273 9676480 ~ 9676700 (-)
G223001 NA non-coding upstream 22673 9861612 ~ 9862114 (-)
G222995 NA non-coding upstream 39489 9878428 ~ 9882261 (-)
G223012 LOC106577306 non-coding upstream 54466 9893405 ~ 9896758 (-)
G223011 rpl18 non-coding upstream 58132 9897071 ~ 9900478 (-)
G223022 NA non-coding upstream 68507 9907446 ~ 9908790 (-)
G222662 NA other downstream 214039 9617625 ~ 9622934 (-)
LOC110520821 LOC106574299 other downstream 274008 9559133 ~ 9594654 (-)
LOC110508584 LOC104949237 other downstream 285733 9528874 ~ 9551643 (-)
G223070 NA other upstream 174022 10012961 ~ 10014892 (-)
znf628 LOC106605829 other upstream 1232007 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 1333181 11172120 ~ 11174367 (-)

Expression


Co-expression Network