G223012 (LOC106577306)


Basic Information

Item Value
gene id G223012
gene name LOC106577306
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9893405 ~ 9896758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU254732
ATACAGAGTATTAATATATTAGGCAAGGCTCTTTGATTTACATATAAATGTCCCAGAGACCCGCTAGAGTCTAGACTGTTATCATAGTCCTGGAGGGCCGATGACTCTTTCCATAGTCAACAAATCCATGACTTCCATGCTGAAGCACTGTGGTTTACACTCTCTCCAATTCAGAAGTATTGTTGGTTTGACTGATAGGAAAGCCAGTACAGTGATATGTTGCGTGGTTCTAGGTTGGATATTGTCCACCCTACTTCCTAGCAGGCACACTAAAGTACAGACAACATATCTACCTCAGTCCAAAATCTTTTGACGTCTGGACATTTCCATAAAATATGCATTTGTGTACCAACCTCGCCGCAGCCATGCCAATACAATTCTGAAAggctttgataaaaaaaaaattaaacctgTGAGGTGTAATATAAGCCTATGTAAGACCATTTGAATAATTTTATACCTTACAGTTAGTTGGATATCAATGTTTTTCCATATTGCATCCCATTGTACAGTGGAGTGAGAGATACACCCAAGTCCTGTTCCCAATGTAACGGAGTAGGGATGTTGCTGTTTGGGGAGGAGAGACCAACCAGCTTGTATAAGGTGGAAACCGTTCCTTTCCCATTAGCAGCACCCCTTAGTTTGTTGTCCATCACGTTTAGATCCCACACCATGCGAGACACTGATATCGGAGGCCTGTGGGTCCTGCTCATGAAGAGCCTCCTGAGGACCACCTTGTTGAAGGGAGCAGTGGAGCGACGGGCCAAGAATCTGTACAGCTTGACCAGGAGCCTCAGGTAGATATCCTGACTCTTGGGCTCCTTTCGGTGCACCTTACGGTCCTTGTTGTGTCGGATGTCAACTCCCATCTTAGACCCAGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254732 True 881 lncRNA 0.44 4 9893405 9896758

Neighbor

gene id symbol gene type direction distance location
LOC110536579 LOC106593149 coding downstream 180217 9708802 ~ 9713188 (-)
LOC110534283 LOC106573819 coding downstream 204324 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 coding downstream 220017 9665862 ~ 9673439 (-)
LOC118945353 LOC106594169 coding downstream 236494 9654293 ~ 9656911 (-)
cyp11b cyp11b coding downstream 239453 9641638 ~ 9653952 (-)
LOC110508630 LOC106605751 coding upstream 46323 9943081 ~ 9960032 (-)
LOC110508696 ndufa3 coding upstream 104687 10001415 ~ 10002941 (-)
LOC110508724 prpf31 coding upstream 122555 10019313 ~ 10024005 (-)
LOC110520824 lmtk3 coding upstream 127690 10024448 ~ 10047484 (-)
LOC110508742 LOC106577219 coding upstream 150877 10047635 ~ 10053368 (-)
G222995 NA non-coding downstream 11144 9878428 ~ 9882261 (-)
G223001 NA non-coding downstream 31291 9861612 ~ 9862114 (-)
G222982 NA non-coding downstream 54466 9836973 ~ 9838939 (-)
G222961 NA non-coding downstream 83924 9802444 ~ 9809481 (-)
G222724 NA non-coding downstream 125596 9766126 ~ 9767809 (-)
G223011 rpl18 non-coding upstream 313 9897071 ~ 9900478 (-)
G223022 NA non-coding upstream 10688 9907446 ~ 9908790 (-)
G222996 LOC106605728 non-coding upstream 16456 9913214 ~ 9914377 (-)
G223043 NA non-coding upstream 72847 9969605 ~ 9995476 (-)
G223047 NA non-coding upstream 77003 9973761 ~ 9998762 (-)
G222662 NA other downstream 270471 9617625 ~ 9622934 (-)
LOC110520821 LOC106574299 other downstream 330440 9559133 ~ 9594654 (-)
LOC110508584 LOC104949237 other downstream 342165 9528874 ~ 9551643 (-)
G223070 NA other upstream 116203 10012961 ~ 10014892 (-)
znf628 LOC106605829 other upstream 1174188 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 1275362 11172120 ~ 11174367 (-)

Expression


Co-expression Network