G222782


Basic Information

Item Value
gene id G222782
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10096183 ~ 10099336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU254465
TTCCTCTTGCAGTCTGCCATTTACACAATCTTGCTTTTTCTTTTCCCAACTTCTGTTTCTGAATTTTATTCCACTTTTCCTCTGCTACTGATATTCTGCAATTCTTTCCTCTTTGTTTCAGATTGACTCTTTCTTTCTAAACTCTCCTTTTGCTTTTTACACACTGTCCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTCCTCTTCGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTCCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTCGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTCGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTCCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTAAACACTGTTCTCTTCGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTAGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTAAACACTGTTCTCTTCGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACATACTGTCCTCTTCGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACACACTGTTCTCTTCGCTGTCTTGTAGTCATCTAGCTGTGCCACTTTTACATTTCTTGTCTTTGATCATTTCTGTAGTTCTGCTTCGCTCTACACTTTGGTATATACGTTCTCTATTAACATGAACTATTTCCTAATACTAACATTACAACCTCCTGATTCTTTTACCTGACTTGTGAGTTCTATCTTTCTGTTTGCTTTAAGCTAGAACTCATTTCCAATTTCTTCTTTTTCTGTTTTCTGTCATTTATTTTGCTTTCCTATTTTAaagttttctaaatgttctgtcCATCTTCTTTTATTTCTCAGCTGTCATTGCTTTCCTTCACTCTACTGTGCTGTCTTCTATTTTTTGTTTCTCTATTACTTCTTCTTTCCCTCTGCTCCTCTGTCCCTCTTCAGGTCATCCTCTTTCCCTCTGCTCCTCTGACCCTCTTCAGATCATCCTCTTTCCCTCTGCTCCTCTTCAGGTCATCCTCTTTCCCTCTGCTCCTCTGACCCTCTTTaggtcctcctctttccctctgctcCTCTGACCCTCTTCaggtcctcctctttccctctgctcctctttaggacctcctctttccctctgctcCTCTGACCCTCTTCaggtcctcctctttccctctgctcCTCTTTAGGACCTCCTCTTTCCCTTTGCTCCTCTGACCCTCTTCaggtcctcctctttccctctgctcCTCTGACCATCTTTaggtcctcctctttccctctgctcCTCTGACCCTCTTCAGGTCCTCCTCTTTCCATCTGCTCCTCTGACCCTCTTCaggtcctcctctttccctctgctcctctttagggtcctcctctttccctctgctcCTCTGACCCTCTTCAGGTCCTCTTCTTttcctctgctctgtccctcttCAGGTCATCCTCTGCTCCCCTCTTTCCATCTGCTCCTCTTTCCCTCTGCaggtcctcctctttccctctgctcatctctgtccctctttaggtcctcctctttccctctgctcctctctaggtcctcctctttccctctgatCCTCTCTAGGTCCTCCTGAGCTCCGATCTGTCCCTCATCaggtcctcctctttccctctgctcctctctaggTCCTCCTCTGCTCCGATCTGTCCCTCTTTaggtcctcctctttccctctgcttctctctgtccctctttaggtcctcctctttccctctgctcTTCCTCTGCTCCGATCTGTCCCTCTaggtcctcctctttccctcttcaggtcctcctctttctctctttccctctgctcctctctgacaCACTTTAggtcttcctctttccctctgctcctctctgaccCTAATTAGGtcttcctcagctccactctgtCCCTCTTTAGGTCCTCCTCTTTCAGCTTTGTATTTAGTTCTTTATGCTGTTTTTCTTCTCCATTCACCTGTTCTGAATGCTTTCCTGTCTTCTGAGCTCCTGTGAAAAACTGCTTTCATCTTTCAGTAGTCTAGTCAGAATATTTCCTCCTCATGTTCTATGCCCCTTGCTTTAATTTTTCTCTTGTACCTGCTGTCTGTCACCTCTTATTCCTGTGTGCTTTTCTCTTCCTATAACTTATTTTCCTTCATTATGAATTTACACAGAAGAGATTAATCTTGTAGAATTTTCTCTCCACGACATGCTAATGAGGATTTCTATTGCTATTCTGTGGCTTGTAGCTTTAGTGCTTCTTCAGCCTACTCAATTTCCTCATTTTGCATGCCTTTTCCCAACTGCTCTCTGGTCATACTGTGAGCCATTCTTTTGACATTTAATATTGTGCCAATCCCTAGAAACAGTGCAATCATGTTGATCAGTGACATGATAGCCAGAATTGCAGGACTTTTGATGTCAATCTATCAACTCACTGAACTGTCCCTGTAATATGATTGATTGTCCATTGCTGTCTCAGTTCAGATTTGTATTAAAATAAATGCCTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254465 True 3154 lncRNA 0.44 1 10096183 10099336

Neighbor

gene id symbol gene type direction distance location
LOC110508764 LOC106577172 coding upstream 1192 10078045 ~ 10094991 (+)
cnot3a NA coding upstream 77742 10005877 ~ 10018441 (+)
LOC110508688 tfpt coding upstream 90298 10002886 ~ 10005885 (+)
LOC110508650 LOC106577252 coding upstream 102756 9973761 ~ 9998774 (+)
LOC110508641 LOC106577286 coding upstream 162522 9926283 ~ 9933661 (+)
LOC110508782 LOC106605762 coding downstream 36555 10135891 ~ 10140365 (+)
LOC110508830 LOC106592928 coding downstream 81102 10180438 ~ 10226836 (+)
LOC110508838 ube2s coding downstream 133816 10233152 ~ 10239964 (+)
LOC110508861 NA coding downstream 145992 10245328 ~ 10266902 (+)
LOC110508845 LOC106605771 coding downstream 168413 10267749 ~ 10276176 (+)
G222805 rps9 non-coding upstream 20217 10074725 ~ 10075966 (+)
G222839 NA non-coding upstream 21809 10073870 ~ 10074374 (+)
G222838 NA non-coding upstream 22411 10073542 ~ 10073772 (+)
G222815 NA non-coding upstream 71329 10024469 ~ 10024854 (+)
G222813 NA non-coding upstream 72068 10023515 ~ 10024115 (+)
G222778 NA non-coding downstream 120 10099456 ~ 10105221 (+)
G222783 NA non-coding downstream 16592 10115928 ~ 10116381 (+)
G222855 NA non-coding downstream 24738 10124074 ~ 10124311 (+)
G222858 NA non-coding downstream 29692 10129028 ~ 10129243 (+)
G222875 grwd1 non-coding downstream 49713 10149049 ~ 10150148 (+)
sphk2 LOC106605743 other upstream 183085 9900809 ~ 9916529 (+)
G222353 LOC106573525 other upstream 414431 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 485044 9606305 ~ 9611139 (+)
LOC110520820 LOC107573682 other upstream 589397 9490333 ~ 9508263 (+)
G222287 NA other upstream 650479 9445047 ~ 9445704 (+)
LOC110508886 LOC106605776 other downstream 212346 10306848 ~ 10314535 (+)
LOC110520833 LOC106575226 other downstream 617315 10716613 ~ 10767669 (+)
cacng8b LOC106576929 other downstream 670337 10769638 ~ 10827279 (+)
G223418 u2af2 other downstream 754366 10853702 ~ 10856200 (+)

Expression


Co-expression Network