G223108


Basic Information

Item Value
gene id G223108
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10225603 ~ 10260865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU254848
CCCCCAATAGACATTATCATTGCTACAGttgtaatattatttttattattgtcTCATTCACTTGTCTTTTTTTGACCTGCGCTGTTGGAGCTCGGATCATAAGTATTTCACTGAGCCCTGCGATTACATCTGCAAcactgtgcatgtgactaataacctCATCTAATCTAATCCATTTTACTCCTTCCCCTTTCTTACAAGACAGTTTGAAATAAGCCTAAAGCccaacaacagaacagaacaggagaaaCGACTTTGAAACAGAAGTGTACTATTAGAGCTTGTCCTCATTTCcccttttcatttaaaaaacataACTACAATGTCATAACGTCAATACCATTCTGGCTCGCCTCGCAACTGTTGACACTGGACAGACAAGGGGGATTGTAAGGGGTGACTTTGACCGAGTGAACCTGGTTCAGACGTCTTCATAATCATgctacctactgtatctatctgACATTAGCTTACTGTGAGGTTCTACAGCAGGCCATTCAACCTTCTTGGTACTGATGTTACGCACCTTTAATTTACATCTAAAGCTCCATTTTTGGGGATTAGTTATTTATTCTTCATCTCAGTAAAGTGTCCATTCATAAAAAAACGGGAAAAAAATCTGTacttttttaaacaaaaaaaattaGCGTGAATACAGGTTCCTTGAATGGGCGGAGTTGGGGTGTGTTTGACTACTCCCGTAACCAGTCAGCATGCTGGGAGAGTACTGTACTTTCAGAAACA

Function

NR:

description
PREDICTED: protein tweety homolog 1-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254848 True 744 lncRNA 0.39 2 10225603 10260865

Neighbor

gene id symbol gene type direction distance location
LOC118945753 NA coding downstream 33832 10191357 ~ 10191771 (-)
flcn LOC106577129 coding downstream 45354 10167784 ~ 10180249 (-)
LOC110508798 LOC106577146 coding downstream 61636 10160334 ~ 10163967 (-)
LOC110508790 grwd1 coding downstream 74458 10144533 ~ 10151145 (-)
LOC110520825 LOC106605761 coding downstream 96701 10099437 ~ 10128902 (-)
pitpnc1b LOC106593696 coding upstream 136199 10396551 ~ 10413072 (-)
LOC110508947 LOC106576934 coding upstream 570701 10831566 ~ 10847242 (-)
LOC110508966 u2af2 coding upstream 592837 10853702 ~ 10865262 (-)
LOC110508957 LOC106576897 coding upstream 604670 10865535 ~ 10876129 (-)
LOC110508973 LOC106576890 coding upstream 617844 10878709 ~ 10895912 (-)
G223148 NA non-coding downstream 6254 10217461 ~ 10219349 (-)
G223115 NA non-coding downstream 71897 10153345 ~ 10153706 (-)
G223112 NA non-coding downstream 81780 10143309 ~ 10143823 (-)
G223081 NA non-coding downstream 136241 10086852 ~ 10089362 (-)
G223163 NA non-coding upstream 2395 10263260 ~ 10266898 (-)
G223169 NA non-coding upstream 37596 10298461 ~ 10298666 (-)
G223172 NA non-coding upstream 45822 10306687 ~ 10306960 (-)
G223173 NA non-coding upstream 46438 10307303 ~ 10307626 (-)
G223175 LOC106605776 non-coding upstream 50289 10311154 ~ 10311493 (-)
LOC110508724 prpf31 other downstream 202400 10019313 ~ 10024005 (-)
G223070 NA other downstream 210711 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 222709 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 542232 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 552164 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 810081 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 911255 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 1015052 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 1466497 11727284 ~ 11741584 (-)
G224869 NA other upstream 1491986 11752851 ~ 11753680 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05837368_05837667 NA coding CI01000016 null 5836583 ~ 5837927 (+)