G223205 (LOC106605777)


Basic Information

Item Value
gene id G223205
gene name LOC106605777
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10355390 ~ 10356030 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU254967
TGTGTGAACAGGATCTCtgtctgtccttccctctctggTGTCCCTCTGGGCCATCCTGGATCCTGTTgcaggaagggatggagggaacccccacaggatagagacagaggaggagatagcctctccctgggcctgctcctcatcctctccctcatccccagCTCCAGGCTCAGCTCCTGCTGCTCCTGCTCCGACCGCCAGGGGGCGCCAGTCGACAGTGGCAAAGAGGAGCATGGGGGGAGACCGGGGCTGGGTGTCGACGATGGGGTTAACGCAGCGGCCAGGAAGCCACACTGCTCCCCCACCACACTGACCCCTATTCCATTAGATTTACCATTCGGAATGCCATTAACAATTCCGTTTGGGACCCCGCTCAGAATTCCAGTGGACTGGATGTAGACCTGAGGGTTAGGGCTGTTGGTGGGGGAGTCAGTTCCagagctggggctggagctggggtaGTGGCTGGGGGTGAGCAAGGAGGTGGGGGTAAGGGGTTCCTGGCTGGTACCCAGCTGGCAGAGGGGCACAGGGGTCAAGCACAGGTGGGGCAGCTGGAAAGGGCGGAGCCTCTGGAGAAGGGCGGGCTTGGTGCCGGAGACAGGAAGACCTCGCTCACGCAGCTGCTGTCGCAACTCAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254967 True 641 lncRNA 0.62 1 10355390 10356030

Neighbor

gene id symbol gene type direction distance location
LOC110508823 josd2 coding downstream 125981 10226896 ~ 10229409 (-)
LOC118945753 NA coding downstream 163619 10191357 ~ 10191771 (-)
flcn LOC106577129 coding downstream 175141 10167784 ~ 10180249 (-)
LOC110508798 LOC106577146 coding downstream 191423 10160334 ~ 10163967 (-)
LOC110508790 grwd1 coding downstream 204245 10144533 ~ 10151145 (-)
pitpnc1b LOC106593696 coding upstream 41034 10396551 ~ 10413072 (-)
LOC110508947 LOC106576934 coding upstream 475536 10831566 ~ 10847242 (-)
LOC110508966 u2af2 coding upstream 497672 10853702 ~ 10865262 (-)
LOC110508957 LOC106576897 coding upstream 509505 10865535 ~ 10876129 (-)
LOC110508973 LOC106576890 coding upstream 522679 10878709 ~ 10895912 (-)
G223204 NA non-coding downstream 452 10354666 ~ 10354938 (-)
G223203 NA non-coding downstream 751 10354406 ~ 10354639 (-)
G223200 NA non-coding downstream 7262 10347589 ~ 10348128 (-)
G223198 NA non-coding downstream 9120 10346035 ~ 10346270 (-)
G223196 NA non-coding downstream 12690 10341945 ~ 10342700 (-)
G223207 LOC106577106 non-coding upstream 2723 10358753 ~ 10363290 (-)
G223208 NA non-coding upstream 8410 10364440 ~ 10364644 (-)
G223222 NA non-coding upstream 31072 10387102 ~ 10387372 (-)
G223225 NA non-coding upstream 35442 10391472 ~ 10391701 (-)
G223227 NA non-coding upstream 36070 10392100 ~ 10392312 (-)
LOC110508724 prpf31 other downstream 332187 10019313 ~ 10024005 (-)
G223070 NA other downstream 340498 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 352496 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 672019 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 681951 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 714916 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 816090 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 919887 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 1371332 11727284 ~ 11741584 (-)
G224869 NA other upstream 1396821 11752851 ~ 11753680 (-)

Expression


Co-expression Network