G223508


Basic Information

Item Value
gene id G223508
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10474127 ~ 10499047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU255428
aaccctgtatctctctttctaaacctgtatctctctttttacccctgtatctctctttctaaacctgtatctctcttcctaaccctgtaactctctacctaaccctgtatctctctttgtaaacctgtatctctcattCTAACCATGTATCTCTTTTTTAACCCTATTTCTCTGTTTCCAAACCTGTATTCTCTCTTTCTaatcctgtatctctctttctaaacctgtatctctctttctaaacccatttctctcttcctaaccctgtatctctctttctaaacctgtatctctctttctaaccctgtatctctcttgcaaaccctgtatttctcttcctaaccctgcatctctctttctaaccctgtatctctcttcctaaccctgtatctctcttcctaaccctgaatatctttctaaacctgtatctctcttcctaacctgtatctctcttcctaaccctgaatctctcttcctaaccctgaatctctcttcctaactctgaatctctttctaaacctgtatctctcttccaaACCCTaaatctctttctaaacctgtatctctctttctaaacatGTATCTCtattcctaaccctgtatctctcttcctaaccctgtatatCTTCCTAAACCTGTAACTCTCTTCttaacctgtatctctcttcctaacctgtatctctcttcctaacctttatctctcttcctaaccctgaatctctcttcctaaccctgtatctctctttctaaacctgtatctctctttctaaacctgtatctctctttttaaccctgtatctctctttctaaacctgaaTCTCTC
>TU255427
aaccctgtatctctctttctaaacctgtatctctctttttacccctgtatctctctttctaaacctgtatctctcttcctaaccctgtaactctctacctaaccctgtatctctctttgtaaacctgtatctctcattCTAACCATGTATCTCTTTTTTAACCCTATTTCTCTGTTTCCAAACCTGTATTCTCTCTTTCTaatcctgtatctctctttctaaacctgtatctctctttctaaacccatttctctcttcctaaccctgtatctctctttctaaacctgtatctctctttctaaccctgtatctctcttgcaaaccctgtatttctcttcctaaccctgcatctctctttctaaccctgtatctctcttcctaaccctgtatctctcttcctaaccctgaatatctttctaaacctgtatctctcttcctaacctgtatctctcttcctaaccctgaatctctcttcctaaccctgaatctctcttcctaactctgaatctctttctaaacctgtatctctcttccaaACCCTaaatctctttctaaacctgtatctctctttctaaacatGTATCTCtattcctaaccctgtatctctcttcctaaccctgtatatCTTCCTAAACCTGTAACTCTCTTCttaacctgtatctctcttcctaacctgtatctctcttcctaacctttatctctcttcctaaccctgaatctctcttcctaaccctgaatctctcttcctaactctgaatctctttctaaacctgtatctctcttccaaACCCAAAATCTCTTtttaaacctgtatctctctttctaaacctgtatctctctttctaaacccatatctctcttcctaaccatgtatctctctttctaaacctgtatctctctttctaaccctgtatctctcttgctaaccctgcatttctcttcctaaccctgtatttctcttcctaaacctgtatctctttctaatcctgtatctctcttcctaaccctgtatctctcttcctaaccctgaatctctttctaatcctgtatctctcttcctaaacctgtatctctcttcctaaacctgtatgTCTCTTTGTgaacctctatctctctttctaaacctgtatctctattcctaaccctgtatttctcttcctaaccctgtatctctcttcctaaccctgcatctctctttctaaccctgtacatctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255428 False 823 lncRNA 0.39 2 10474127 10499047
TU255427 True 1215 lncRNA 0.39 2 10474827 10499047

Neighbor

gene id symbol gene type direction distance location
pitpnc1b LOC106593696 coding downstream 61055 10396551 ~ 10413072 (-)
LOC110508823 josd2 coding downstream 244718 10226896 ~ 10229409 (-)
LOC118945753 NA coding downstream 282356 10191357 ~ 10191771 (-)
flcn LOC106577129 coding downstream 293878 10167784 ~ 10180249 (-)
LOC110508798 LOC106577146 coding downstream 310160 10160334 ~ 10163967 (-)
LOC110508947 LOC106576934 coding upstream 332519 10831566 ~ 10847242 (-)
LOC110508966 u2af2 coding upstream 354655 10853702 ~ 10865262 (-)
LOC110508957 LOC106576897 coding upstream 366488 10865535 ~ 10876129 (-)
LOC110508973 LOC106576890 coding upstream 379662 10878709 ~ 10895912 (-)
si:ch211-149k23.9 LOC106591404 coding upstream 428948 10927995 ~ 10936251 (-)
G223504 NA non-coding downstream 5034 10468853 ~ 10469093 (-)
G223477 NA non-coding downstream 59072 10414679 ~ 10415055 (-)
G223230 NA non-coding downstream 79326 10394478 ~ 10394801 (-)
G223227 NA non-coding downstream 81815 10392100 ~ 10392312 (-)
G223521 NA non-coding upstream 2865 10501912 ~ 10503948 (-)
G223527 NA non-coding upstream 18624 10517671 ~ 10517991 (-)
G223529 NA non-coding upstream 19342 10518389 ~ 10574057 (-)
G223531 NA non-coding upstream 20749 10519796 ~ 10523242 (-)
G223560 NA non-coding upstream 66847 10565894 ~ 10566998 (-)
LOC110508724 prpf31 other downstream 450924 10019313 ~ 10024005 (-)
G223070 NA other downstream 459235 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 471233 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 790756 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 800688 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 571899 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 673073 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 776870 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 1228315 11727284 ~ 11741584 (-)
G224869 NA other upstream 1253804 11752851 ~ 11753680 (-)

Expression


Co-expression Network