G223277


Basic Information

Item Value
gene id G223277
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10480185 ~ 10489646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU255077
gttaggaagagagatacagggttaggaagagagatacaggtttagaaagagagatacagggttaggaagagagatacatggttagaaagagattcagggttaggaagagggattcagggttaggaagagagatacagggttaggaagagatacaggtttaggaagagagatacagctttagaaagagagatacaggtttagaaagagattcagggttaggaagagagatgcagggttaggaagagagatacaggtttagaaagagagatacagggttaggaagagagaatACAGGTTTGGAAACAGAGAAATAGGGTTAAAAAAAGAGATACatggttagaaagagagatacacgtttagaaagagagatacagggttagaaagagagatacagggttagaaagagattcagggttagaaagagattcagggttaggaaaAGAGAATACAGGTTTGGAAACAGAGAAATAGGGTTAAAAATGAGATACATGGTTAGaatgagagatacaggtttacaaagagagatacagggatagGTAGAGAGTTaaagggttaggaagagagatacaggtttagaaagagagatacagggttaaaaaGAGATTCAGtgttaggaagagagattcagggttagaatgagagatacagggttaggaagagagattcagggtAAGGAAGAGATACAGGGTGAGGAAGAGAGatgcagggttaggaagagagatgcagggttaggaagagaaatacagggttagcaagagagatacagggttattaagagagatacagggttaaaaagagagatacagggttaaaaaGAGAGATACGGGGTTATGAATAGAGACACAGGTTTGGAAACAGAGATAAAGGGTTAAAAatagagattcagggttagaaagagagatacagggttaggaagagagatacagggttaggaagagagatgcagggttaggaagagaaatacagggttaggaagag
>TU255078
AGGCTTagaaagagattcagggttagaaagagagatacagggttaggaagagaggtacagggttagaaagagagTTaaagggttaggaagagagatacaggtttagaaagagagatacagggttaaaaaGAGATTCAGtgttaggaagagagattcagggttagaatgagagatacagggttaggaagagagattcagggtAAGGAAGAGATACAGGGTGAGGAAGAGAGatgcagggttaggaagagagatgcagggttaggaagagaaatacagggttagcaagagagatacagggttattaagagagatacagggttaaaaagagagatacagggttaaaaaGAGAGATACGGGGTTATGAATAGAGACACAGGTTTGGAAACAGAGATAAAGGGTTAAAAatagagattcagggttagaaagagagatacagggttaggaagagagatacagggttaggaagagagatgcaggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255077 False 978 lncRNA 0.40 3 10480185 10489646
TU255078 True 478 lncRNA 0.41 2 10483519 10487912

Neighbor

gene id symbol gene type direction distance location
LOC110508924 LOC106605777 coding upstream 116512 10340929 ~ 10363673 (+)
LOC110508886 LOC106605776 coding upstream 165650 10306848 ~ 10314535 (+)
LOC110520828 NA coding upstream 173986 10295464 ~ 10306199 (+)
LOC110508875 LOC106605773 coding upstream 193096 10278141 ~ 10287089 (+)
LOC110508845 LOC106605771 coding upstream 204009 10267749 ~ 10276176 (+)
prkcg LOC105019084 coding downstream 171444 10661090 ~ 10701728 (+)
LOC110520833 LOC106575226 coding downstream 226967 10716613 ~ 10767669 (+)
cacng8b LOC106576929 coding downstream 279992 10769638 ~ 10827279 (+)
LOC110508993 LOC106576906 coding downstream 387150 10876757 ~ 10878635 (+)
LOC110509020 LOC106605819 coding downstream 423435 10913081 ~ 10925718 (+)
G223238 NA non-coding upstream 69716 10409843 ~ 10410469 (+)
G223232 NA non-coding upstream 83039 10396369 ~ 10397146 (+)
G223228 NA non-coding upstream 86605 10393379 ~ 10393580 (+)
G223226 NA non-coding upstream 87925 10392037 ~ 10392260 (+)
G222940 NA non-coding upstream 142424 10337369 ~ 10337761 (+)
G223283 NA non-coding downstream 24739 10514385 ~ 10514638 (+)
G223339 NA non-coding downstream 135991 10625637 ~ 10637350 (+)
G223344 NA non-coding downstream 145959 10635605 ~ 10641319 (+)
G223349 NA non-coding downstream 159670 10649316 ~ 10649743 (+)
G223350 NA non-coding downstream 161175 10650821 ~ 10651143 (+)
sphk2 LOC106605743 other upstream 567087 9900809 ~ 9916529 (+)
G222353 LOC106573525 other upstream 798433 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 869046 9606305 ~ 9611139 (+)
G223418 u2af2 other downstream 364056 10853702 ~ 10856200 (+)
G223434 LOC106595748 other downstream 460503 10950149 ~ 10952739 (+)

Expression


Co-expression Network