G223283


Basic Information

Item Value
gene id G223283
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10514385 ~ 10514638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU255084
GgcccaaatatatacagttgggaaGAGAAAACCTCTCCCAACATTGAGAACCAATCAGTGATCAGTTCAATCATCCCAACCAACCTGGGACACAGTAAAAACAGATGTGCCAGAGATTCATACTCAGCACAGAATGGACACTCCTCCCCAACAGTAgggtccaggtgtaccagatgcttGTTGGTGGCTATAGCTCCATGTATTATCCATTGGAGGTCAGCTGTCCTCTTATCAATAGGCAGTTTATATAATGA

Function

NR:

description
Transposon TX1 hypothetical protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255084 True 254 lncRNA 0.44 1 10514385 10514638

Neighbor

gene id symbol gene type direction distance location
LOC110508924 LOC106605777 coding upstream 150712 10340929 ~ 10363673 (+)
LOC110508886 LOC106605776 coding upstream 199850 10306848 ~ 10314535 (+)
LOC110520828 NA coding upstream 208186 10295464 ~ 10306199 (+)
LOC110508875 LOC106605773 coding upstream 227296 10278141 ~ 10287089 (+)
LOC110508845 LOC106605771 coding upstream 238209 10267749 ~ 10276176 (+)
prkcg LOC105019084 coding downstream 146452 10661090 ~ 10701728 (+)
LOC110520833 LOC106575226 coding downstream 201975 10716613 ~ 10767669 (+)
cacng8b LOC106576929 coding downstream 255000 10769638 ~ 10827279 (+)
LOC110508993 LOC106576906 coding downstream 362158 10876757 ~ 10878635 (+)
LOC110509020 LOC106605819 coding downstream 398443 10913081 ~ 10925718 (+)
G223276 NA non-coding upstream 86 10470406 ~ 10514299 (+)
G223277 NA non-coding upstream 24739 10480185 ~ 10489646 (+)
G223279 NA non-coding upstream 28088 10483182 ~ 10486297 (+)
G223238 NA non-coding upstream 103916 10409843 ~ 10410469 (+)
G223232 NA non-coding upstream 117239 10396369 ~ 10397146 (+)
G223339 NA non-coding downstream 110999 10625637 ~ 10637350 (+)
G223344 NA non-coding downstream 120967 10635605 ~ 10641319 (+)
G223349 NA non-coding downstream 134678 10649316 ~ 10649743 (+)
G223350 NA non-coding downstream 136183 10650821 ~ 10651143 (+)
sphk2 LOC106605743 other upstream 601287 9900809 ~ 9916529 (+)
G222353 LOC106573525 other upstream 832633 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 903246 9606305 ~ 9611139 (+)
G223418 u2af2 other downstream 339064 10853702 ~ 10856200 (+)
G223434 LOC106595748 other downstream 435511 10950149 ~ 10952739 (+)

Expression


Co-expression Network