G223385


Basic Information

Item Value
gene id G223385
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10777883 ~ 10779973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU255288
ctcccaagtctctcccccagtctctcttcagtctctcttcagtcTCTCCCAACTCTTtatccagtctctccagtctctcccacaggctctcttcattctctctccagtctctccccagtctctctcttactctctctccagtctctctccagtctctcccaaGTCTttcctccagtctctccagtctctcccccagtctctcttcagtctctcgtcagtctctcttcagtctctctccagtctctccccagtctctctcttactctctctccagtctctcccaagtctctcttcagtctctcttcagtctctcttcagtctcccaccagtctccccctgtctcccccaagtctctccagtctctctccagtctctctcttactctctctccagtctctctccagtctctcccaaGTCTCTCCcaagtctctctccagtctctcttcagtctctctccagtgtcccccagt
>TU255292
ctcccaagtctctcccccagtctctcttcagtctctcttcagtctctcccAACTCTTtatccagtctctccagtctctccctcaggctctcttcattctctctccagtctctccccagtctctctcttactctctctccagtctctctccagtctctcccaaGTCTttcctccagtctctccagtctctcccccagtctctcttcagtctctcgtcagtctctcttcagtctctctccagtctctccccagtctctctcttactctctctccagtctctcccaagtctctcttcagtctctcttcagtctctcttcagtctcccaccagtctccccctgtctcccccaagtctctccagtctctctccagtctctctcttactctctctccagtctctctccagtctctcccaaGTCTCTCCcaagtctctctccagtctctcttcagtctctctccagtgtcccccagt
>TU255290
ctcccaagtctctcccccagtctctcttcagtctctcttcagtcTCTCCCAACTCTTtatccagtctctccagtctctcccacaggctctcttcattctctctccagtctctccccagtctctctcttactctctctccagtctctctccagtctctcccaaGTCTttcctccagtctctccagtctctcccccagtctctcttcagtctctcgtcagtctctcttcagtctctctccagtctctccccagtctctctcttactctctctccagtctctcccaagtctctcttcagtctctcttcagtctctcttcagtctcccaccagtctccccctgtctcccccaagtctctccagtctctctccagtctctctcttactctctctccagtctctctccagtctctcccaaGTCTCTCCcaagtctctctccagtctctcttcagtctctctccagtgtcccccagt
>TU255291
ctcccaagtctctcccccagtctctcttcagtctctcttcagtctctcccAACTCTTtatccagtctctccagtctctccctcaggctctcttcattctctctccagtctctccccagtctctctcttactctctctccagtctctctccagtctctcccaaGTCTttcctccagtctctccagtctctcccccagtctctcttcagtctctcgtcagtctctcttcagtctctctccagtctctccccagtctctctcttactctctctccagtctctcccaagtctctcttcagtctctcttcagtctctcttcagtctcccaccagtctccccctgtctcccccaagtctctccagtctctctccagtctctctcttactctctctccagtctctctccagtctctcccaaGTCTCTCCcaagtctctctccagtctctcttcagtctctctccagtgtcccccagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255288 False 470 lncRNA 0.53 3 10777883 10779973
TU255292 False 470 lncRNA 0.37 2 10777883 10779973
TU255290 False 470 lncRNA 0.49 3 10778607 10779973
TU255291 True 470 lncRNA 0.41 2 10778607 10779973

Neighbor

gene id symbol gene type direction distance location
LOC110520833 LOC106575226 coding upstream 25066 10716613 ~ 10767669 (+)
prkcg LOC105019084 coding upstream 76155 10661090 ~ 10701728 (+)
LOC110520829 LOC102782376 coding upstream 172827 10431758 ~ 10605056 (+)
LOC110508924 LOC106605777 coding upstream 414210 10340929 ~ 10363673 (+)
LOC110508886 LOC106605776 coding upstream 463348 10306848 ~ 10314535 (+)
LOC110508993 LOC106576906 coding downstream 96823 10876757 ~ 10878635 (+)
LOC110509020 LOC106605819 coding downstream 133108 10913081 ~ 10925718 (+)
isoc2 isoc2 coding downstream 161808 10941781 ~ 10944125 (+)
foxj2 LOC106605824 coding downstream 165652 10945625 ~ 10947532 (+)
LOC110537149 LOC106591073 coding downstream 202847 10982780 ~ 10995885 (+)
G223255 NA non-coding upstream 73811 10702913 ~ 10704072 (+)
G223350 NA non-coding upstream 126740 10650821 ~ 10651143 (+)
G223349 NA non-coding upstream 128140 10649316 ~ 10649743 (+)
G223381 NA non-coding downstream 47416 10827389 ~ 10829316 (+)
G223414 NA non-coding downstream 67672 10847645 ~ 10847885 (+)
G223421 NA non-coding downstream 77580 10857553 ~ 10857877 (+)
G223424 NA non-coding downstream 88354 10868327 ~ 10872184 (+)
G223441 NA non-coding downstream 120623 10900596 ~ 10900908 (+)
LOC110508845 LOC106605771 other upstream 501710 10267749 ~ 10276176 (+)
sphk2 LOC106605743 other upstream 864785 9900809 ~ 9916529 (+)
G222353 LOC106573525 other upstream 1096131 9679760 ~ 9681752 (+)
G223418 u2af2 other downstream 73729 10853702 ~ 10856200 (+)
G223434 LOC106595748 other downstream 170176 10950149 ~ 10952739 (+)
mfap5 LOC106575133 other downstream 256304 11036238 ~ 11041281 (+)

Expression


Co-expression Network