G223717


Basic Information

Item Value
gene id G223717
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10918689 ~ 10920990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU255689
tgtagaataatagtgaagagatcatACATGGAACACATGGAATTATGAAGTAatcaacaaagtgttaaacagaaagtgttaaacaaatcgaaatatattttagattttagattattcaaagtagccacccttcgccttgatgacagctttgcacactcttggcatatgtgtcccaacttttgactggtactgtatctacaAGTTCAGAATACTGTATATTACATATGATCTGCTGGCAACCGTTTATATGTAGTTATtgaccactagaggaacccatCTGACCACTAGATCAACCCATCtgaccactagaggaacccatctgaccactagagTAACCCATTTGACCACTAGAGTAACCCATCTGACCACTAGAGTAACCCATTtgaccactagaggaacccatttgaccactagaggaacccatttgaccactagaggaacccatctgaccactagaggaacccattTGACCACTAGAGTAACCCATTtgaccactagaggaacccatctgaccactagaggaacccattTGACCACTAGAGTAACCCATTtgaccactagaggaacccatctgaccactagaggaacccatttgaccactagaggaacccatctgaccactagaggaacccatctgaccactagaggaacccattTGACCACTAGAGTAACCCATTtgaccactagaggaacccatctgaccactagaggaacccatctgaccactagaggaacccattTGACCACTCCTGTGTGTCATTTTTACCAGTTAGCTTGTCTTGTCTTCTAATATTCACTTTCACTTACATTATCTTTGGAACTACATCAATTGGccacattattttaagatttAATCTACGTTAATTGAATGGATGTTTAGTAAACTTCCTGGGACACATCatattcagctccctgagtcaGATATGTGTTCTGCCCTACCAAGCACAAGAGCAGTAACTGCTTATAGAATGAAACTGAGAAAAATCACTTTTAAATTGTCCAGCCAAATGACTTGTAGGCAGATAATTGGTGCTTTGGTTATCTGTTGTCTTACtgtgagttttttttattttattatattcacCCCGACCCTGACCTCTGACATGACCTTTGGCCCTACCTTTGGCCCTACCTTTGGCCctttacactacatggccaaaaggatgtggacatcccttcaaatttgtggattcggctatttcagccactcccgttgctgacaggtgtataaaattgagcacagagccatgcaatctctatagacaaacattgccagtagaatggcccgtactgaagagctcagtgactttcaacgtggcaccgtcataggataccacctttccaacaggtcaGTTCGTAACATTTCTGCCCTGTAGAGCtgacccggtcaactgtaagtgctgtaagtggaaacgtctagcagCAACAAGGGCTtagtcacacaagctcacagaacgggaccgcctagtgctgaagcacatagctACATAGTAAAAAATATTCTgccctcagttgcaacactcactaacaaATTCACTCACTAACGTTtgtcggaagcttcatgaaatgggtttccatggccgagcagccacaaaccattctaagatcaccatgcgcaatgccaaacgtCAGCTGGAGTTGtgcacgtgtccacatacttttgtagtcTATGTAGTGAATTTCTATGTGTCATACAGTGTCATATACTGTAGTAGTAACCACAGCCCAAAGCTCAGTGAAGCCAAGGTAAAAGGCAGTAACTGACTTGAGTGACTGTTGTTACTGCTTTCTgtccttggtttcacagtaacttttTCCAGTTACTGCAAATATGACccccccattttctccaaaacacaacaCAGTGGAGGCAGGATATTTGTCCAGGTGACAAAGCATGCAGTTACTGCTCTTTTGGTTTGTAGGGCAGGTGATGACACCTGCATGAAGGAATGACCTGCAGTATGTATTACACACATATCATGGGCTATTTGGCCAATCAAGTGCTATTTCAAAATTAGGTGATTTTGCAACgacaatcaaaataaaataaatccacTGTAATAACAGATTCTAGACCTATGATGTAAATGATTCTCTATAAAGTCAATAGTCAATCAGGGGCCATCTGAGTGTAACTTTAGAGTCAGGCCTTAAAGCTGTGACCCACATAGAGACAGGAACCACTCATCTCTCACACTTAAAACACCCAGATTAACGTGGATTATCGCCAAGACCCAGGCCATAAGGCCAAACACTGAGATGTCCTCCTcctttttcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255689 True 2281 lncRNA 0.36 2 10918689 10920990

Neighbor

gene id symbol gene type direction distance location
LOC110508973 LOC106576890 coding downstream 22777 10878709 ~ 10895912 (-)
LOC110508957 LOC106576897 coding downstream 42560 10865535 ~ 10876129 (-)
LOC110508966 u2af2 coding downstream 53427 10853702 ~ 10865262 (-)
LOC110508947 LOC106576934 coding downstream 71447 10831566 ~ 10847242 (-)
pitpnc1b LOC106593696 coding downstream 505617 10396551 ~ 10413072 (-)
si:ch211-149k23.9 LOC106591404 coding upstream 7005 10927995 ~ 10936251 (-)
LOC110537203 LOC106576885 coding upstream 16452 10937442 ~ 10941795 (-)
epn1 LOC106605818 coding upstream 29143 10950133 ~ 10968515 (-)
LOC110509040 necp1 coding upstream 121977 11042967 ~ 11051742 (-)
LOC110520834 LOC106575151 coding upstream 130877 11051867 ~ 11054170 (-)
G223711 NA non-coding downstream 6981 10911271 ~ 10911708 (-)
G223710 NA non-coding downstream 8193 10910236 ~ 10910496 (-)
G223707 NA non-coding downstream 15894 10902561 ~ 10902795 (-)
G223703 NA non-coding downstream 69336 10848946 ~ 10849353 (-)
G223702 NA non-coding downstream 69985 10848408 ~ 10848704 (-)
G223723 NA non-coding upstream 23529 10944519 ~ 10944813 (-)
G223734 NA non-coding upstream 53229 10974219 ~ 10974422 (-)
G223881 NA non-coding upstream 61917 10982907 ~ 10983190 (-)
G223886 LOC106591073 non-coding upstream 73685 10994675 ~ 10995433 (-)
G223898 NA non-coding upstream 117472 11038462 ~ 11039737 (-)
LOC110508724 prpf31 other downstream 895486 10019313 ~ 10024005 (-)
G223070 NA other downstream 903797 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 915795 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1235318 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 1245250 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 149956 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 251130 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 354927 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 806372 11727284 ~ 11741584 (-)
G224869 NA other upstream 831861 11752851 ~ 11753680 (-)

Expression


Co-expression Network