G223815


Basic Information

Item Value
gene id G223815
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11198425 ~ 11202897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU255835
cccctctccctttctctctcaaacATGTTTTGTTACTATTTCCTTGCTAATGTTAATAATAATCACGTAACTATAATTTGAGCCTGCGGCAACACTTTACGTTGCATTAAGTGGCATTATTACACAATTATTACATGATAGTTAATGTTGTATTTATGCATTGTTACACTGTAACTGGTAAATTTCAATTCAATGCAGGTACACAAATGCAATTTCAAGATGCCTACACAAAATAGCTACATAAAATGCCCATCAAACTACTTGAATTCAAACTTGTACAGTCTTGATTTTTCATAAAGTGCCCCAAATATGAAGCAGCTATTAACTAATATAATTCATAATCCATTTTTTAtccataattgtgtgtgtgtgtaatattatATTAACCAATATAATCCATCAGTATTACCTTAACTGCAGTGCAATAAAACATTAACTACAGTGTAATAATGCAACTTAATGTTAAGTGTTATCCACCCAGCTTTATACCCCATTCTGTTGCTGACAGAAGCATGAAACCATGAAAAAAATACCTTGCTTTTCTTCTGGCTAGTATTTTCTCCCTAGCAACTGGATCTGCGTTAATCTTTTGTCTGTGTCGTGCAGCCCTCTCCTTATTACACAACGACATCTACAGTATAAAGATAATGTGCCTTGAAAAAACCTTAAAATGCCGTAAAATAGTTTAAAATGATAATATTCAGTATTAATACAACAAGTAAATATGAATTAAATATGAATTCAATTTAATGATTCAATGTTGTAAAAAATAACATGCGGTAACAAAGCTACTGTCATTCAGAATAACGAGTGACATTGTGGTATAACATGAAACTTTTGTTGTGCTGAAGGACAAGTGTGATACTGAAGGATGGATTTCATACATAAACATATTTAACAAGCAGTTCCTTGgccacctacagttgaagtcagaagtttacatgcacttaggatggagtcattaaaactaatttttcaaccactccacaaatttcttgttaacaaactatagttttggtaagtcggttagaacatctactttgtgcatgacacaagtcatttttgtcacgccctgaccatagtttactttgtattttctatgttttgattggtcagggtgtgatctgagtgggcattctatgttacatgtctagtttgtctagttctatgttcggcctgatatggttctcaatcagaggcaggtgttcgtcattgtctctgattgggaaccatatttaggtagcctgggtttcactgtgtgtttgtgggtgattgttcctgtctatgtgtttttcaccagataggctgttttaggttttcgttacgttcatcacgttctttatttttgtagtgtttgcattgattcgtgttttacgtttgttcattaaaacatggatcgcaatctacacgctgcattttggtccgactctccttcacatacagaaaaccgtt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255835 True 1452 lncRNA 0.35 2 11198425 11202897

Neighbor

gene id symbol gene type direction distance location
LOC110509074 LOC106576860 coding upstream 24062 11166919 ~ 11174363 (+)
mfap5 LOC106575133 coding upstream 157144 11036238 ~ 11041281 (+)
LOC110537149 LOC106591073 coding upstream 202540 10982780 ~ 10995885 (+)
foxj2 LOC106605824 coding upstream 250893 10945625 ~ 10947532 (+)
isoc2 isoc2 coding upstream 254300 10941781 ~ 10944125 (+)
ephb6 LOC106576842 coding downstream 30012 11232909 ~ 11308010 (+)
LOC110509096 NA coding downstream 58296 11261193 ~ 11268540 (+)
LOC118945782 LOC106605840 coding downstream 72283 11275180 ~ 11278634 (+)
trpv6 LOC106605837 coding downstream 121153 11324050 ~ 11338618 (+)
LOC110520909 LOC106576839 coding downstream 137409 11340306 ~ 11346518 (+)
G223788 NA non-coding upstream 74438 11100790 ~ 11123987 (+)
G223775 LOC106605829 non-coding upstream 120559 11072618 ~ 11077866 (+)
G223757 NA non-coding upstream 196090 11002130 ~ 11002335 (+)
G223752 NA non-coding upstream 209151 10989075 ~ 10989274 (+)
G224027 NA non-coding downstream 143805 11346702 ~ 11353026 (+)
G224017 c209e non-coding downstream 156125 11359022 ~ 11363657 (+)
G224016 NA non-coding downstream 162528 11365425 ~ 11368219 (+)
G224033 NA non-coding downstream 186009 11388906 ~ 11389145 (+)
G223748 NA other upstream 154733 11041848 ~ 11043692 (+)
G223434 LOC106595748 other upstream 245686 10950149 ~ 10952739 (+)
G224035 NA other downstream 188436 11391333 ~ 11391962 (+)
G224052 gstk1 other downstream 230223 11433120 ~ 11436460 (+)
LOC110520911 zyx other downstream 377885 11580308 ~ 11600483 (+)
mrpl51 LOC100194563 other downstream 585632 11788492 ~ 11790660 (+)
LOC110537447 LOC106577011 other downstream 811611 12005269 ~ 12053650 (+)

Expression


Co-expression Network