G223949 (LOC100846954)


Basic Information

Item Value
gene id G223949
gene name LOC100846954
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11216565 ~ 11224830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU256004
caaaaaagttatacatttatttgcattttaatgacggaaataagtatttgacccctctacAAAACATGACtaagtacttggtggcaaaacccttgttggcaatcacagaggtcagatgtttcttgtagttggccaccaggtttgcacacatctccaggaccttaatgtgcttcttcttgaaccactcctttgttgccttggccatgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctagctgagggaaggaggttctcccccaagatttgatggtacatggcccgtccatcgtcccttttgttgcggtgaagttgtcctgtctccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcatagacagcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctccattttggtctcatctgaccacaacactttcactttcactttcacccctctgaatcattcagatgttcataggcaaacttcagacgggcatgtatatgtgctgctttcttgagcagggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgataaTTGCAActccatgaggtgagatcttgcatggagccccaggccgagggagattgacagttcttttgtgtttcttccatttacaaataatcgcaccaacttTTGTCagcttctcaccaagctgcttggcaatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatcctcggagagctctttggtcttagcctttttggagagtttggaatctgattgattgatttcttctgtggacaggtgtcttttatacaggtaacaaactgggattaggagcactccctttaagagtgtgctcctaatctcagctcgttacctgtataaaagacacctgggagccagaaatctttttGATTGAGAGGAGGTCAaacacttatttccctcattaaaatgcaaatcaatttataacatttttgacatgtgtttttctggattttcttgttgttattctgtctctcactgttcaaataaacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttttcccctcactgtatgtAGTCTGATGAGGCAGACAGAAGCCACAAATATGGGTGAGCCATGCCAGTGTTCTAGCTGGCTCAGTGTTCAGGGAGAGACACGTCCGTGCTGTTGAGTCTCTGTAGCAGTTCAAGGTCAGGCTCCAGAGACGTAAAAGCTAGGTTAGGATAcaccaggcagagagacagataggctgGGTTAGGATAcaccaggcagagagacagataggctgGGTTAGGATAcaccaggcagagagacagataggctaGGTTAGGATAcaccaggcagagagacagataggctaGGTTAGGATACACCAGGCAGAGAGGATGTTTAGGTTCCCGTACTGCCCTCCCAAACCCACTGAACTCAGTACACATCAACCCAAATCCTATTCCCATTTTAACCCAAGTGAAGGACAATATGGGAAGTTTATTACTGAACATATTTGTTGGAATGTTTATCCTTATAAATGCTAATACTATAAAGGTTTTTACTTGTAATGCCAATCATTAAAAAGTACAGTAGTAAAATTGGTCATTGATTAACTAATGATTGGCGTCTATGAGTTAAGTCAGCTAAAAATAAATGTCATAAATTACTTGGGCATTGGTAAAAGCTAATTACAAATTATCATTAATAACTTACAGTAATAAATACTTTAGGTAGTTTAAATGAAAATGActgaaggcacacacacacatgcacacactgacacacagtaaACATAAATCCTCTTTGACACGCTCTCTCATGATGCCTGCATTATCATCCCCGACCCTATACccaacacacactatacacacacccgACACTAAGCTGCTATTTCATATGGAAGCTCCTCTCCATAACAGTGCATATCTCTAGTCCTGCACTTTAAAAGTCCAATTCAACCTCAAATGGATAAAATAATGTTATACTCCCTACATTACAGTATCTAAGCACAAGGGGCTtgtctaaccctctaaccctgttCTCTAACTGTTCCACTATCTACGGATTCACTGACGATCACTTATTTTACTTCTCTTCCGTCGGAAACTCAACCATTGGAACTTTCTCCGTCGTCGGGGAGACGGGCAGGGTGACCATACCCTCTGGGGGAGGAGATTGGGCTCCTGCAGTGCCGGCGAATCCTTTGGCAATGTCATCAAAGGTCCGCCCCTTGGTCTCCGGGACTTTGAAGTAGGTGAAGACGAAGAAGAATATGAGGAAGATCATGAAGATGATGAAGACGTAAGGACCACACAG

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256004 True 2565 lncRNA 0.44 3 11216565 11224830

Neighbor

gene id symbol gene type direction distance location
rasip1 LOC106605844 coding downstream 51595 11151396 ~ 11164970 (-)
LOC110509048 il-11 coding downstream 129436 11079975 ~ 11087129 (-)
znf628 LOC106605829 coding downstream 136995 11068525 ~ 11079570 (-)
LOC110520907 nat14 coding downstream 149592 11061915 ~ 11066973 (-)
LOC110520834 LOC106575151 coding downstream 162395 11051867 ~ 11054170 (-)
LOC110509113 c209e coding upstream 134183 11359013 ~ 11363845 (-)
LOC110509134 LOC106576832 coding upstream 140593 11365423 ~ 11368231 (-)
LOC110510606 LOC106605835 coding upstream 145802 11370632 ~ 11386718 (-)
styk1b LOC106576787 coding upstream 199963 11424793 ~ 11432989 (-)
LOC110509171 LOC100196661 coding upstream 208288 11433118 ~ 11436628 (-)
G223950 NA non-coding downstream 36682 11178455 ~ 11179883 (-)
G223924 NA non-coding downstream 108325 11104090 ~ 11108240 (-)
G223919 NA non-coding downstream 127007 11089346 ~ 11089558 (-)
G223969 LOC106605840 non-coding upstream 51087 11275917 ~ 11278628 (-)
G224676 NA non-coding upstream 121831 11346661 ~ 11353026 (-)
G224679 NA non-coding upstream 133342 11358172 ~ 11358416 (-)
G224692 NA non-coding upstream 166193 11391023 ~ 11392426 (-)
G224693 NA non-coding upstream 167784 11392614 ~ 11393104 (-)
G223942 LOC106576860 other downstream 42198 11172120 ~ 11174367 (-)
LOC110508724 prpf31 other downstream 1193362 10019313 ~ 10024005 (-)
G223070 NA other downstream 1201673 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 1213671 10001415 ~ 10002941 (-)
LOC110509576 LOC106576947 other upstream 502532 11727284 ~ 11741584 (-)
G224869 NA other upstream 528021 11752851 ~ 11753680 (-)
G224873 NA other upstream 571060 11795890 ~ 11796309 (-)
LOC110509592 LOC100136300 other upstream 583953 11808113 ~ 11811663 (-)

Expression

G223949(LOC100846954) Expression in all Baseline Samples

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G223949(LOC100846954) Expression in each Bioproject

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G223949(LOC100846954) Expression in each Sample
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Co-expression Network