G224017 (c209e)


Basic Information

Item Value
gene id G224017
gene name c209e
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11359022 ~ 11363657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU256104
ATAACTGATTCTTTATTACAGGGACAAATGATATTAAACGTTTGTTTCTTTCAGGATTGTGAATCAGTACTTAAAACATAATGATTGGTTAATGCACATAATCATGTAGGTCATTATCACATTCAAAGGCATTGAGAACACATATAGAAAACATCTCAGCAGAACAAGCAAATGAGTGCAATATACAGTGTTAATCTTTTACATTAGTGCAAACTCTAACAGAAACTGGCAGGCCAACTTGATTGTTCTTCACAAGGCATAACTAACTGTAATGTGATTATATTTACCATCATTGGTTATACCTGGATGTCTAATGAATTATAACATAGACTTAGGTCATACAGTGTATAATCAAGGTTTAAAAGGCTGTTGATAGAGATGTGTAATCATGGGATAAAAGGCTATGGAATAGGACTGAATGATAGAAGTCAAAAGAGAATCCGTATTGACAGGTTTCTTAGTTGGAATATGGCAGTGGCCACCAACCCTGCTGACCTACATGGTGTACAACACTTAAATGATTCAGCTAATCAAGGTGATTCATTGACTAGCTAAATCATGTGTCTtactgctgggctggaacaaaagcctgtacATCGTatagctctccaggaccagggttggtgactgCTGGCAGATGGTGAAGTCTGTCCTTTAGCGCCCCCTCTGGCAGATGTAGAAGCTGTACTGGTCACATGATGTGGAGCTCCAGCTTCTCTCAGGAGGATCCCTTCCTGTCAGTAACCCACAATCCCCTTGTCTGTTGGATCCTGACCAGTAACTTTGTCCCAGTGCAGTGTTGTTGACCCAAACCCAGTTCCTGGTTCTCTGTCTCAGGCCGATCCAGTACATCAGGTTCCCCTTCTTCGTTAGAAAGGTCTGCACTGTTTTGTTTGTTATGACAGCCAGATCTGCCCCTCTCTTCTTACACTCGTCCCTGCTCTCGTCCCAGTTCATTCTGTCTCTGGAGAGGAAGTAGCAGGAGCTCTCAAAGTGCAGCCAGCCTTCATCACACATGTGGCAGGCAGGGaCCTGGCTCTGTTGTTGGAAGTATTGTGCTTGGCATGTCTGCAGGCTGCACACCTCAGTGGACTGGAACCTCTCCTCTTTAGCCTCAATCCCTTTTTCAGTCACACTCCCCTTCTCTTTAGCCTCAATCCCTTTTTCAGTACCATGACAGACTTGAGGCTGGAATGGAACTAGAGAATAATGAAGAAAGAAAGAATAATAGAATGGAATCATATTACACATTTGTTTTGTTCTTTCTTG
>TU256105
ATAACTGATTCTTTATTACAGGGACAAATGATATTAAACGTTTGTTTCTTTCAGGATTGTGAATCAGTACTTAAAACATAATGATTGGTTAATGCACATAATCATGTAGGTCATTATCACATTCAAAGGCATTGAGAACACATATAGAAAACATCTCAGCAGAACAAGCAAATGAGTGCAATATACAGTGTTAATCTTTTACATTAGTGCAAACTCTAACAGAAACTGGCAGGCCAACTTGATTGTTCTTCACAAGGCATAACTAACTGTAATGTGATTATATTTACCATCATTGGTTATACCTGGATGTCTAATGAATTATAACATAGACTTAGGTCATACAGTGTATAATCAAGGTTTAAAAGGCTGTTGATAGAGATGTGTAATCATGGGATAAAAGGCTATGGAATAGGACTGAATGATAGAAGTCAAAAGAGAATCCGTATTGACAGGTTTCTTAGTTGGAATATGGCAGTGGCCACCAACCCTGCTGACCTACATGGTGTACAACACTTAAATGATTCAGCTAATCAAGGTGATTCATTGACTAGCTAAATCATGTGTCTtactgctgggctggaacaaaagcctgtacATCGTatagctctccaggaccagggttggtgactgCTGGCAGATGGTGAAGTCTGTCCTTTAGCGCCCCCTCTGGCAGATGTAGAAGCTGTACTGGTCACATGATGTGGAGCTCCAGCTTCTCTCAGGAGGATCCCTTCCTGTCAGTAACCCACAATCCCCTTGTCTGTTGGATCCTGACCAGTAACTTTGTCCCAGTGCAGTGTTGTTGACCCAAACCCAGTTCCTGGTTCTCTGTCTCAGGCCGATCCAGTACATCAGGTTCCCCTTCTTCGTTAGAAAGGTCTGCACTGTTTTGTTTGTTATGACAGCCAGATCTGCCCCTCTCTTCTTACACTCGTCCCTGCTCTCGTCCCAGTTCATTCTGTCTCTGGAGAGGAAGTAGCAGGAGCTCTCAAAGTGCAGCCAGCCTTCATCACACATGTGGCAGGCAGGGaCCTGGCTCTGTTGTTGGAAGTATTGTGCTTGGCATGTCTGCAGGCTGCACACCTCAGTGGACTGGAACCTCTCCTCTTTAGCCTCAATCCCTTTTTCAGTCACACTCCCCTTCTCTTTAGCCTCAATCCCTTTTTCAGTACCATGACAGACTTGAGGCTGGAATGGAAATTTGACACAGAGGATGATGATGACGAGCAGTAGAACCAGACAGATGACAGACAGTAGTAAACACACTGCGCGGTACAGACCAACGTTCCCCAGGACCTGCAGGTCTTTCCCTTGCTGCTTCTTCACTTCAACCGAAAACTTTGCGTTTGCCTCATCTGGTAATTTGACATTCCCTCCACTTCCTACAATACGGCAAAACTTGATATACATTGCTGCTGTTCCTGACCCACCGACTGCGACTGTAAAGTACTGTGAAGGCTAAATGCACTGTGGTTTTAAAAaacctccctctccgtctctatAGCAACGTGCCCCTTTTAGATTTATAATTAA

Function

NR:

description
CD209 antigen-like protein E isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256104 False 1269 lncRNA 0.43 4 11359022 11360798
TU256105 True 1533 lncRNA 0.49 6 11359022 11363657

Neighbor

gene id symbol gene type direction distance location
LOC110520909 LOC106576839 coding upstream 12504 11340306 ~ 11346518 (+)
trpv6 LOC106605837 coding upstream 20404 11324050 ~ 11338618 (+)
ephb6 LOC106576842 coding upstream 51012 11232909 ~ 11308010 (+)
m6pr mprd coding downstream 35363 11399020 ~ 11406578 (+)
LOC110509154 LOC106576792 coding downstream 47731 11411388 ~ 11420807 (+)
LOC110509281 LOC106576719 coding downstream 105117 11468774 ~ 11476776 (+)
LOC118944450 LOC106605830 coding downstream 116140 11479797 ~ 11489832 (+)
LOC118944486 LOC106592935 coding downstream 132649 11496306 ~ 11501325 (+)
G224027 NA non-coding upstream 5996 11346702 ~ 11353026 (+)
LOC118945782 LOC106605840 non-coding upstream 80392 11275180 ~ 11278634 (+)
G223815 NA non-coding upstream 156125 11198425 ~ 11202897 (+)
G223788 NA non-coding upstream 235035 11100790 ~ 11123987 (+)
G223775 LOC106605829 non-coding upstream 281156 11072618 ~ 11077866 (+)
G224016 NA non-coding downstream 1768 11365425 ~ 11368219 (+)
G224033 NA non-coding downstream 25249 11388906 ~ 11389145 (+)
G224034 NA non-coding downstream 26000 11389657 ~ 11389896 (+)
G224037 NA non-coding downstream 34217 11397874 ~ 11398304 (+)
G224051 NA non-coding downstream 68570 11432227 ~ 11432808 (+)
LOC110509074 LOC106576860 other upstream 184659 11166919 ~ 11174363 (+)
G223748 NA other upstream 315330 11041848 ~ 11043692 (+)
mfap5 LOC106575133 other upstream 317762 11036238 ~ 11041281 (+)
LOC110537149 LOC106591073 other upstream 363607 10982780 ~ 10995885 (+)
G223434 LOC106595748 other upstream 406283 10950149 ~ 10952739 (+)
G224035 NA other downstream 27676 11391333 ~ 11391962 (+)
G224052 gstk1 other downstream 69463 11433120 ~ 11436460 (+)
LOC110520911 zyx other downstream 217125 11580308 ~ 11600483 (+)
mrpl51 LOC100194563 other downstream 424872 11788492 ~ 11790660 (+)
LOC110537447 LOC106577011 other downstream 650851 12005269 ~ 12053650 (+)

Expression


Co-expression Network