G224116 (LOC106575912)


Basic Information

Item Value
gene id G224116
gene name LOC106575912
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11613566 ~ 11615975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU256226
aggacatttctatgtgaccccaaacctttgaacggtagtgtacatgtaaTTTGTGAGGAACATTGTATTGATTTTTATTACATTGACAAAATATAACAGTCGTATACGTAAGGCTACGGTAATTTGGCAAATCTACTACGGACATATTATTCTTCTAGTCCATACTCAGTCCATTTCCACAAGGAAGCACGTCTTTTAGCAAGCCCAGGTCACTATATCCGTGGCTTTGTATTGCGGCTTACAACCATTTTACGGGTTTTCTGATTGGCTGCTTTCAAGGACTTTCCTGCAGATTTAGGGGCTTTGTAGCCTGTTTTTTGGACCTTGGCTGGTGATTTTGATGCTTGTCCTGCTGGTTTGTGGCTTTTGCCTACTTGTTTTGGTCTATCTCCTATTTCCCTTTGACCTTTTCCTACAACTGTTTTGTTCTTGTCTGCTGGTTGAGCTGTTTTTCCTGCTGGTTTAGTTGTTTTTGCTCCTGGTTTCAGAGCTTTTCCTGCTGGTTTAGTTGTTTTTGCTCCTGGTTTCAGAGCTTTTCCTGCTGGTTTAGTTGTTTTTGCTCCTGGTTTCTGGCCTTTTCCTGTTGGTTTCAAGGCCTTTCCTTTCTCTGCTGCTGGCTTCAAAATTCCTTTTTTCTGCTTGGCCCTCTCAGCTGCTGCAAGGTTTCTCATGGCTCTTGTCTTAACTCTCTTCTCATACGTCAGTTTCTGTAGTTTTTAGAACAGGAGACGAGAGAGAAACATCTGCATAATTCAAAATTCCCAAATAACTGGTTGTGGTTTGACAATGACAACTTGAGCACCTTTTATCAATGAATTATGCACCATGGTGCAATTTGCTTCCTGCTCAGGTGAAATGAGCCAGTGGAACCTCAAACTGCCAAAGagctaaaacaaaaaaaaacacagacagaaatgTATTACTTAAACAGTTACCTTGTTGAGTTTAAATGACCCAGATGCACCAACTCCAGTAGTCTGCACCAGTGTCTCCTTCCTCACCAGGCCTTTCACAGCTAAGTTCACACGGGTATTGTTCTTGGTAACATCATAGCCACCAGCAGCCAGGGCATGCTTGAGGTCCACCATGGAGATGCCACCCCGGTGCTTGCACTGGGAGACTACCCGAAGGATGAGCTGGGAGACCCGGGTAGCCACACGCCTTGCATCGTTGGTTTTGGGTGCAGATGTAGCCTCTGCCTGGTACTTGAACAGGCGAACTGGGGTCGCTGGATACAGATGGAGATAGGGATGGGGTCATTAGTTATTCAATATTTTATTTGACATAAACATCACATACTTCAaaattactttttgaaaatcattAAGATAttgtagtgaccttaacccaacacctagcgacctggtcaagaGCTTTGGATGTCTTGGCGCACCAGGTGTCCTGGGTttaagacccatttgtgactacCCCCTGACTTTGCTGCATTGGTGTTAGACATTAGACTGGTTGCAGTCATCAAGAGTGCAGGCGCCGCAATTAACTGTAGTGAAGCACAAGAATGTGCTCTCTGAAGGATGGGGGTAGTGTAGCAACCTTGACCCAAAACCAAGTGACCTCGTCAAAATGTTCCGATCTCTTCGTGTAACAGCTAGGAGTTGACAAGATGTCATCCTGGCCCCGGTTCCCAGGTAACGTTAGCATCCACCTCTAGCCCACACCGGCCAGAGGTTTGTTTAAAGACAATACTATGTGGGTTTGTGCTACCTGGGAATGGGGCAACCCCCCCGAATTTGCTGAAATATGATGCGCAAGCAAATATTGAACAAGCTAAAGAAATTGGCTAGCTAGATCACTCACTTGGCAAAGGCACTTTTTCGTTTCCTGTAACATTCTTCTTCTCTTGGATTGCACGCTTCAATAGCTGACCCAAACGTCTAGCCCCTGCTTTCCCAAGGCCCCGACCACCTGGGTTTTTTACTGGCTTCGTTTGCTGCTTCACGGGCGACTTGACCGGTGGTTTTACTGGCGGTTTACGTTTAACTTTCTCTTGTCCTCGGTTGATTACTGTAACTGTTCCCTTTGATTCTATGTTAACTTTGCCCTTTCTCTCTTGTTTGACATCTTCCTTTTTGCGGGCGTTTTTTGGCATATTGTTGATTACAAGTTGTGGTCGAGCAAATCACACAAAGTAAagataactagctaacgttgctaTATTTGGTTAAACAGTGAGTTGGGAAAGTGGGATACGTTAGCGAACGAAATGATGACAACGTTTTAtcaatttcaatttacaaaaaacaaCAATATCAGTTTTCAAACGGTCGTTCGAAACAATTTTTTAACGGTCGTTCGATAATTATATTGAACGCGGGTCGGGTCACAGAAGCAAGAAAATCAACAAGCCAGCAACCAACATACACTGTAGGTTTGAACTAGCTCCTCACTG

Function

NR:

description
histone H1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256226 True 2410 lncRNA 0.54 1 11613566 11615975

Neighbor

gene id symbol gene type direction distance location
LOC110509324 LOC106575899 coding upstream 502 11610579 ~ 11613064 (+)
kel LOC106575861 coding upstream 4601 11602383 ~ 11608965 (+)
LOC110520911 zyx coding upstream 13083 11580308 ~ 11600483 (+)
LOC118944486 LOC106592935 coding upstream 112241 11496306 ~ 11501325 (+)
LOC118944450 LOC106605830 coding upstream 123734 11479797 ~ 11489832 (+)
LOC110509359 LOC106576663 coding downstream 7990 11623965 ~ 11630699 (+)
LOC110509378 LOC106605735 coding downstream 14868 11630843 ~ 11635397 (+)
ncapd2 ncapd2 coding downstream 19702 11635677 ~ 11654262 (+)
LOC118964380 NA coding downstream 20991 11636966 ~ 11637264 (+)
LOC118964379 NA coding downstream 23141 11639116 ~ 11639420 (+)
G224134 NA non-coding upstream 37108 11576151 ~ 11576458 (+)
G224126 NA non-coding upstream 51585 11561759 ~ 11561981 (+)
G224105 NA non-coding upstream 60976 11552284 ~ 11552590 (+)
G224099 NA non-coding upstream 72080 11540868 ~ 11541486 (+)
G224097 NA non-coding upstream 81834 11530489 ~ 11531732 (+)
G224138 NA non-coding downstream 2712 11618687 ~ 11619112 (+)
G224163 NA non-coding downstream 77848 11693823 ~ 11694023 (+)
G224165 NA non-coding downstream 80519 11696494 ~ 11696725 (+)
G224167 NA non-coding downstream 85077 11701052 ~ 11701355 (+)
G224177 NA non-coding downstream 135739 11751714 ~ 11751899 (+)
G224052 gstk1 other upstream 177106 11433120 ~ 11436460 (+)
G224035 NA other upstream 221604 11391333 ~ 11391962 (+)
LOC110509074 LOC106576860 other upstream 439203 11166919 ~ 11174363 (+)
G223748 NA other upstream 569874 11041848 ~ 11043692 (+)
mrpl51 LOC100194563 other downstream 172554 11788492 ~ 11790660 (+)
LOC110537447 LOC106577011 other downstream 398533 12005269 ~ 12053650 (+)
G224297 NA other downstream 404990 12020965 ~ 12022444 (+)
LOC110509826 LOC106576393 other downstream 643346 12259134 ~ 12357204 (+)
LOC110503596 LOC106576258 other downstream 753016 12368841 ~ 12430981 (+)

Expression


Co-expression Network