G224836


Basic Information

Item Value
gene id G224836
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11706135 ~ 11708248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257073
CTCAGCTGTATCTTTTATTCTTCATTCCATCTCTCTGTCAGTACACAGAGCTCTGCGTGGAACTCTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTCTGTCAGTACACAGAGCTCTGCGTGGAACTCTCTGTCAGTACACAGAGCTCTGCGTGGAACTCTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTCTGTCAGTACACAGAGCTCTGCGTGGAACTCTCTGTCAGTACACAGAGCTCTGCGTGGAACTCTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTCTGTCAGTACACAGAGCTCTGTGATGAACTCTCTGTCAGTACACAGAGCTCTGTGATGAACTCTCTGTCAGTACACAGAGCTCTGTGATGAAGCACACATGTTCAAGGGGACAGTCCAGTTTCACAGAACTCACACCTCACCAAAACAAAAACCAAGGCCTGATTTACCAAGCAGTGCAATGTTTACACTTGCTCTTTTCGGAGGGAATTATAAGATGAGATACAaagatagaaacagaaaacagacTTTTCTTGTCCCTTGACCTTTTGTTCAATGACTCGTTCCCTTTTGAACCGAGCAGGTGTAAACATGGCACTGGTGCAGATGCTTAGTAAATGAGGCCTTGGTGATTCCTAACAGTCTTCTCATTGACAACTCAGTCTATTCACCTGCATGCTAGCTTACTCAGGCCAGATGGAATTAGTTGATGGTAAAATATATGGACCAGAGAATACACTGGTCCTCACAGAGCAAGAGCATTGGCTCCTGGTCTATGAGAAATATTAAGGACCAATCAAATATCTCCATCCACATTAAAAGTTCAGCTATGTGCCAAATCTGGGAACCTGACACTTAAGTATTTCTGACTGTGGACCTCCTTGCATTGCCAGTGTTTAAACATACAATATATCCAACATAGCGTTTTCCTTTAATGCATACAATATCATAGCAATCATACCATCATTATGTTAAAGCATTTGAGTAgtaatcttcttttttttttttacactttggtgccatttttaaaaagaattTACTTTGTAATCACATACACTCATGAAGAAAGTGGATTATTGTTGGAATATTAGAGCGATTATTGTACATCtttgatttatatatatatacagtatttcaagGCGATTTGTAGAGATGGGAATCCAGTCAGCAGAACACATCACTGTATGGTCCCTACCACTCTAGTTTACAATGATTCAGTTATACCGTTAGCCTTCAGTTCAGTTGTGAAGAGGATATGAATTTGTCTATTGTCAGACAGACACTGGAATACAGTGTGCATTTTAGGACTATTGCATTCTTCATGTGGTAAGTGAACCAGTAAAACTCTTTTTAAAAACCAAGGACATTAGAACACTCTCCTAAACATACACGCTGACTCATGCATACATACTGCAGagactgtgtctctctgtgcgtGTAGTAAAATATACAAAGAAAAACATATTCTCACTATTTCTCTGCTGCCTTCTATTCTCCATTTTATTCTCCAGTTCTGGCCAAAGGGCAGGAAcgctagggccaggagttttactGGCCATATGACCCGAGCAGAAAAAACCCAAGCATTATAGCACAggaccctcaaactcaactctggacctcaaagccaggtCCATTGCATGTTTTCATTGTTCCcgtctaatcagggactgatttagacctgggacaccaggtggtgcAATTAGTaaatcaggtagaacagaaaagcagcagGCTCCGGATCTTGTAGTCTAAGAGTTGAATAGCCAGGTCTAGAACCTaggtcatgtggtcaggagaaACACCCAAGGAATGGCATATCCAATACATAGCTTAAGACATGCATATCATTTTTTCATGGTTCCAAAACCTGTTCTTCACAACCTATATAATCGTTCAGAGAAAGCCTTGGAAACCCTTCTACAATACTAGAATATTGAGGTGTGACCAGCAGACGGCACCTGATTAAACATCTTCCTCATCAaacaagaaaaagaaagaaacacAAATG
>TU257074
CTCAGCTGTATCTTTTATTCTTCATTCCATCTCTCTGTCAGTACACAGAGCTCTGCGTGGAACTCTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTCTGTCAGTACACAGAGCTCTGCGTGGAACTCTCTGTCAGTACACAGAGCTCTGCGTGGAACTCTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTCTGTCAGTACACAGAGCTCTGTGATGAACTCTCTGTCAGTACACAGAGCTCTGTGATGAACTCTCTGTCAGTACACAGAGCTCTGTGATGAAGCACACATGTTCAAGGGGACAGTCCAGTTTCACAGAACTCACACCTCACCAAAACAAAAACCAAGGCCTGATTTACCAAGCAGTGCAATGTTTACACTTGCTCTTTTCGGAGGGAATTATAAGATGAGATACAaagatagaaacagaaaacagacTTTTCTTGTCCCTTGACCTTTTGTTCAATGACTCGTTCCCTTTTGAACCGAGCAGGTGTAAACATGGCACTGGTGCAGATGCTTAGTAAATGAGGCCTTGGTGATTCCTAACAGTCTTCTCATTGACAACTCAGTCTATTCACCTGCATGCTAGCTTACTCAGGCCAGATGGAATTAGTTGATGGTAAAATATATGGACCAGAGAATACACTGGTCCTCACAGAGCAAGAGCATTGGCTCCTGGTCTATGAGAAATATTAAGGACCAATCAAATATCTCCATCCACATTAAAAGTTCAGCTATGTGCCAAATCTGGGAACCTGACACTTAAGTATTTCTGACTGTGGACCTCCTTGCATTGCCAGTGTTTAAACATACAATATATCCAACATAGCGTTTTCCTTTAATGCATACAATATCATAGCAATCATACCATCATTATGTTAAAGCATTTGAGTAgtaatcttcttttttttttttacactttggtgccatttttaaaaagaattTACTTTGTAATCACATACACTCATGAAGAAAGTGGATTATTGTTGGAATATTAGAGCGATTATTGTACATCtttgatttatatatatatacagtatttcaagGCGATTTGTAGAGATGGGAATCCAGTCAGCAGAACACATCACTGTATGGTCCCTACCACTCTAGTTTACAATGATTCAGTTATACCGTTAGCCTTCAGTTCAGTTGTGAAGAGGATATGAATTTGTCTATTGTCAGACAGACACTGGAATACAGTGTGCATTTTAGGACTATTGCATTCTTCATGTGGTAAGTGAACCAGTAAAACTCTTTTTAAAAACCAAGGACATTAGAACACTCTCCTAAACATACACGCTGACTCATGCATACATACTGCAGagactgtgtctctctgtgcgtGTAGTAAAATATACAAAGAAAAACATATTCTCACTATTTCTCTGCTGCCTTCTATTCTCCATTTTATTCTCCAGTTCTGGCCAAAGGGCAGGAAcgctagggccaggagttttactGGCCATATGACCCGAGCAGAAAAAACCCAAGCATTATAGCACAggaccctcaaactcaactctggacctcaaagccaggtCCATTGCATGTTTTCATTGTTCCcgtctaatcagggactgatttagacctgggacaccaggtggtgcAATTAGTaaatcaggtagaacagaaaagcagcagGCTCCGGATCTTGTAGTCTAAGAGTTGAATAGCCAGGTCTAGAACCTaggtcatgtggtcaggagaaACACCCAAGGAATGGCATATCCAATACATAGCTTAAGACATGCATATCATTTTTTCATGGTTCCAAAACCTGTTCTTCACAACCTATATAATCGTTCAGAGAAAGCCTTGGAAACCCTTCTACAATACTAGAATATTGAGGTGTGACCAGCAGACGGCACCTGATTAAACATCTTCCTCATCAaacaagaaaaagaaagaaacacAAATG
>TU257075
CTCAGCTGTATCTTTTATTCTTCATTCCATCTCTCTGTCAGTACACAGAGCTCTGCGTGGAACTCTCTGTCAGTACACAGAGCTCTGCGTGGAACTCTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTGTCAGTACACAGAGCTCTGCGTTGAACTCTCTGTCAGTACACAGAGCTCTGTGATGAACTCTCTGTCAGTACACAGAGCTCTGTGATGAACTCTCTGTCAGTACACAGAGCTCTGTGATGAAGCACACATGTTCAAGGGGACAGTCCAGTTTCACAGAACTCACACCTCACCAAAACAAAAACCAAGGCCTGATTTACCAAGCAGTGCAATGTTTACACTTGCTCTTTTCGGAGGGAATTATAAGATGAGATACAaagatagaaacagaaaacagacTTTTCTTGTCCCTTGACCTTTTGTTCAATGACTCGTTCCCTTTTGAACCGAGCAGGTGTAAACATGGCACTGGTGCAGATGCTTAGTAAATGAGGCCTTGGTGATTCCTAACAGTCTTCTCATTGACAACTCAGTCTATTCACCTGCATGCTAGCTTACTCAGGCCAGATGGAATTAGTTGATGGTAAAATATATGGACCAGAGAATACACTGGTCCTCACAGAGCAAGAGCATTGGCTCCTGGTCTATGAGAAATATTAAGGACCAATCAAATATCTCCATCCACATTAAAAGTTCAGCTATGTGCCAAATCTGGGAACCTGACACTTAAGTATTTCTGACTGTGGACCTCCTTGCATTGCCAGTGTTTAAACATACAATATATCCAACATAGCGTTTTCCTTTAATGCATACAATATCATAGCAATCATACCATCATTATGTTAAAGCATTTGAGTAgtaatcttcttttttttttttacactttggtgccatttttaaaaagaattTACTTTGTAATCACATACACTCATGAAGAAAGTGGATTATTGTTGGAATATTAGAGCGATTATTGTACATCtttgatttatatatatatacagtatttcaagGCGATTTGTAGAGATGGGAATCCAGTCAGCAGAACACATCACTGTATGGTCCCTACCACTCTAGTTTACAATGATTCAGTTATACCGTTAGCCTTCAGTTCAGTTGTGAAGAGGATATGAATTTGTCTATTGTCAGACAGACACTGGAATACAGTGTGCATTTTAGGACTATTGCATTCTTCATGTGGTAAGTGAACCAGTAAAACTCTTTTTAAAAACCAAGGACATTAGAACACTCTCCTAAACATACACGCTGACTCATGCATACATACTGCAGagactgtgtctctctgtgcgtGTAGTAAAATATACAAAGAAAAACATATTCTCACTATTTCTCTGCTGCCTTCTATTCTCCATTTTATTCTCCAGTTCTGGCCAAAGGGCAGGAAcgctagggccaggagttttactGGCCATATGACCCGAGCAGAAAAAACCCAAGCATTATAGCACAggaccctcaaactcaactctggacctcaaagccaggtCCATTGCATGTTTTCATTGTTCCcgtctaatcagggactgatttagacctgggacaccaggtggtgcAATTAGTaaatcaggtagaacagaaaagcagcagGCTCCGGATCTTGTAGTCTAAGAGTTGAATAGCCAGGTCTAGAACCTaggtcatgtggtcaggagaaACACCCAAGGAATGGCATATCCAATACATAGCTTAAGACATGCATATCATTTTTTCATGGTTCCAAAACCTGTTCTTCACAACCTATATAATCGTTCAGAGAAAGCCTTGGAAACCCTTCTACAATACTAGAATATTGAGGTGTGACCAGCAGACGGCACCTGATTAAACATCTTCCTCATCAaacaagaaaaagaaagaaacacAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257073 False 2082 lncRNA 0.42 2 11706135 11708248
TU257074 False 2016 lncRNA 0.41 3 11706135 11708248
TU257075 True 1890 lncRNA 0.41 3 11706135 11708248

Neighbor

gene id symbol gene type direction distance location
LOC110509335 NA coding downstream 91297 11613213 ~ 11614838 (-)
fam131bb fam131b coding downstream 157394 11503867 ~ 11548741 (-)
LOC110509245 LOC106576972 coding downstream 251769 11449258 ~ 11454366 (-)
LOC110509171 LOC100196661 coding downstream 269507 11433118 ~ 11436628 (-)
styk1b LOC106576787 coding downstream 273146 11424793 ~ 11432989 (-)
LOC110509576 LOC106576947 coding upstream 19036 11727284 ~ 11741584 (-)
LOC110509520 lag-3 coding upstream 67807 11776055 ~ 11779268 (-)
LOC110509592 LOC100136300 coding upstream 99865 11808113 ~ 11811663 (-)
c1r c1r/c1s coding upstream 111365 11819613 ~ 11825101 (-)
LOC110509614 ret1 coding upstream 150470 11858718 ~ 11862407 (-)
G224838 NA non-coding downstream 1995 11702921 ~ 11704140 (-)
G224852 NA non-coding downstream 3430 11701895 ~ 11702705 (-)
G224850 NA non-coding downstream 10275 11695615 ~ 11695860 (-)
G224848 NA non-coding downstream 12420 11693480 ~ 11693715 (-)
G224797 LOC100135813 non-coding downstream 12808 11654879 ~ 11693327 (-)
G224867 NA non-coding upstream 41805 11750053 ~ 11750752 (-)
G224868 NA non-coding upstream 44170 11752418 ~ 11752790 (-)
G224869 NA non-coding upstream 44603 11752851 ~ 11753680 (-)
G224874 NA non-coding upstream 73162 11781410 ~ 11781727 (-)
G224870 NA non-coding upstream 97889 11806137 ~ 11808096 (-)
G223969 LOC106605840 other downstream 427507 11275917 ~ 11278628 (-)
G223942 LOC106576860 other downstream 531768 11172120 ~ 11174367 (-)
znf628 LOC106605829 other downstream 632385 11068525 ~ 11079570 (-)
LOC110508724 prpf31 other downstream 1682932 10019313 ~ 10024005 (-)
G223070 NA other downstream 1691243 10012961 ~ 10014892 (-)
G224873 NA other upstream 87642 11795890 ~ 11796309 (-)
G224954 LOC106576536 other upstream 306678 12014926 ~ 12016101 (-)

Expression


Co-expression Network