G224869


Basic Information

Item Value
gene id G224869
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11752851 ~ 11753680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257110
gggtaACGATAAAAAGAGAGCAAAAAAGACAGAGAAGTATAGTTTAATAAGCTAATGCTACGTCGAGGAATGCAGAGACTACATACCAGATGTTATACACACCATTACACcgtcatacacacacagaccacacagacagacatgcaatTAATGAGCAAGAAAACAAAGCTATACATCATGTATGCTGCAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTATCTAACACTTACAGTCATACACCGAATAGAACAGTATCTAAC
>TU257113
gggtaACGATAAAAAGAGAGCAAAAAAGACAGAGAAGTATAGTTTAATAAGCTAATGCTACGTCGAGGAATGCAGAGACTACATACCAGATGTTATACACACCATTACACcgtcatacacacacagaccacacagacagacatgcaatTAATGAGCAAGAAAACAAAGCTATACATCATGTATGCTGCAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACCGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACCGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACCGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTATCTAACACTTACAGTCATACACCGAATAGAACAGTATCTAAC
>TU257114
gggtaACGATAAAAAGAGAGCAAAAAAGACAGAGAAGTATAGTTTAATAAGCTAATGCTACGTCGAGGAATGCAGAGACTACATACCAGATGTTATACACACCATTACACcgtcatacacacacagaccacacagacagacatgcaatTAATGAGCAAGAAAACAAAGCTATACATCATGTATGCTGCAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACCGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACCGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTATCTAACACTTACAGTCATACACCGAATAGAACAGTATCTAAC
>TU257115
gggtaACGATAAAAAGAGAGCAAAAAAGACAGAGAAGTATAGTTTAATAAGCTAATGCTACGTCGAGGAATGCAGAGACTACATACCAGATGTTATACACACCATTACACcgtcatacacacacagaccacacagacagacatgcaatTAATGAGCAAGAAAACAAAGCTATACATCATGTATGCTGCAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACCGAATAGAACAGTATCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTAGCTAACACTTACAGTCATACACTGAATAGAACAGTATCTAACACTTACAGTCATACACCGAATAGAACAGTATCTAAC

Function

NR:

description
PREDICTED: adhesive plaque matrix protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257110 False 470 lncRNA 0.43 3 11752851 11753680
TU257113 False 614 TUCP 0.48 2 11752851 11753680
TU257114 False 650 TUCP 0.36 3 11752851 11753680
TU257115 True 578 TUCP 0.37 3 11752851 11753680

Neighbor

gene id symbol gene type direction distance location
LOC110509576 LOC106576947 coding downstream 14795 11727284 ~ 11741584 (-)
LOC110509335 NA coding downstream 138013 11613213 ~ 11614838 (-)
fam131bb fam131b coding downstream 204110 11503867 ~ 11548741 (-)
LOC110509245 LOC106576972 coding downstream 298485 11449258 ~ 11454366 (-)
LOC110509171 LOC100196661 coding downstream 316223 11433118 ~ 11436628 (-)
LOC110509520 lag-3 coding upstream 22375 11776055 ~ 11779268 (-)
LOC110509592 LOC100136300 coding upstream 54433 11808113 ~ 11811663 (-)
c1r c1r/c1s coding upstream 65933 11819613 ~ 11825101 (-)
LOC110509614 ret1 coding upstream 105038 11858718 ~ 11862407 (-)
LOC110509511 ptn6 coding upstream 109309 11862989 ~ 11895102 (-)
G224868 NA non-coding downstream 61 11752418 ~ 11752790 (-)
G224867 NA non-coding downstream 2099 11750053 ~ 11750752 (-)
G224836 NA non-coding downstream 44603 11706135 ~ 11708248 (-)
G224838 NA non-coding downstream 48711 11702921 ~ 11704140 (-)
G224852 NA non-coding downstream 50146 11701895 ~ 11702705 (-)
G224874 NA non-coding upstream 27730 11781410 ~ 11781727 (-)
G224870 NA non-coding upstream 52457 11806137 ~ 11808096 (-)
G224899 NA non-coding upstream 63380 11817060 ~ 11819210 (-)
G224918 NA non-coding upstream 110130 11863810 ~ 11865070 (-)
G224919 NA non-coding upstream 111682 11865362 ~ 11865765 (-)
G223969 LOC106605840 other downstream 474223 11275917 ~ 11278628 (-)
G223942 LOC106576860 other downstream 578484 11172120 ~ 11174367 (-)
znf628 LOC106605829 other downstream 679101 11068525 ~ 11079570 (-)
LOC110508724 prpf31 other downstream 1729648 10019313 ~ 10024005 (-)
G224873 NA other upstream 42210 11795890 ~ 11796309 (-)
G224954 LOC106576536 other upstream 261246 12014926 ~ 12016101 (-)
G224988 LOC106605856 other upstream 317607 12071287 ~ 12081233 (-)
G225099 NA other upstream 582561 12336241 ~ 12340966 (-)

Expression


Co-expression Network