G224189 (c1r/c1s)


Basic Information

Item Value
gene id G224189
gene name c1r/c1s
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11785487 ~ 11836170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU256308
tggccagtcctcttctggctgtgccaggtggagatggTACATGTCCATTAAGGCCAGATGACTAGCATCGTcattcagaggttgagacagcaggtgcggtagagagagaggtagaacgtccggtgaacaggtcagggttccatagtcgcaggcagaacagttgaaactggagcagcagcatgaccaggtggactggggacagctagGAGTCATGagaccaggtagtcctgaggcatggtcctagggctcagatcctctgggaggggaggaagagagggagagtgagagaattagagggagcacacttaaattcacacaggacaccagataagacaggataattacaccagatataaaaGACTGACCCTAGgccccggcacatagactattgcagcatagatactggaggccgAGGCAGGGAGGGGGTCAGGGGACACTGtttacagtgcattaggaaagtattcagaccccttgacttttttcaaatgttGTAAACGTTTTTaaacaaactattatattaatctgactgtGCATGCAACTGTACACACTGCTAGACAGCCAATTTcagatcttgccatagattttcaagcagatttaagtcaaaactgtaacctggtcactcaggaacattcactgtcttctaggtaagtaactccagtgtagatttggtcttgtgttttaggttattctcctgatgaaagttaaatatttaatcTCCCAGAGTCTGGTGgaaaccagattttcctctagaattttgcctgtgcttagctccattccgtttatttttttatcctggaaAACTCCCCAATACTTAACAATTACAAACGAttacatacccataacatgatgcagccaccactatgcttgaaaatatggagagtggtactcagtagtgtgttgtgttggatttgctccaaacataacactttgtattcaggacaagaaGTTAATTGATTTGCcaattttttttgcaATTAAACATTTGGGCTTTATTTGGATTCATAAATCAGGACTTGAATTGAAAATACTTTTGTATTTCTGTTCTTTTTCCCTCGTTGTCTTTGCCTATATATTTTACTTATTGTCCTCCATGGTTTTGTTGATCCAGCTAATGTATTTAGCCACACGGGTGTACACTCCATATCTACCAGTCTGCCCACAACCCACACCCCAACTGACAATACCTGCAGCCCAAAACCGTTTAGTAATACTATCCCTCAAGACGTATGCCCCTCCACTGTCCCCCATACAGGAGTCCTTGCCCCCCTCAGGTACTCCGGCACAGAACATGTTGACTGTCAGAACAGGGATCTTCTTTGTTGAAGTTGCTGCTTTTGCTCGGTTGACAGAGTCTTGGCACTCATCCTCTTTCACTACTGGTAGGAGTATGTACCTGAGATCGTTGGCAATGGTATCATCTTCTTTGATGCCAAAGCCTGACACCATACCAATCTGGCCAATGTTGTAAGTAGCGTTCTCTGGTGGCAGACACAATGGCATGATGGCAGCCTGGAATGTGAGTGGTTGTTGGAGTTTTATCAGGGCGATGTCATGATTGTAGTTTGCACtgtctgtgtttttgtattcagggtgggggtggagggaggtGACACCAAGAGGGGTGAGCTTTGCAAGTTTTTCTGCATCATTGTCTCCCACAAAAACCGAACTTTCTCCTTTAGCACAAGTTTGTCCTGCTGCACCAGGTTATGAGCTGCAGTCATGATCCAGCGGTCCCCGATCACCATGGCCCCTCCTCTGCCTCCGTCCACACTGAGCATCACCTGCCAGGGGATGGTTTTGTCTGGGGCTTTGTCTCCCCCCATGATCCTCTGAAAGCCTGAGATGGACATTGTGGGCTGACCACAGACTGGGGGAGGGAATGACAGGGGTGTCAAGGTTGTCTCTCCATGTTCTATCTGCTGCACAAGTGTAGCTCaCAGTTGCTCCTCCAAGGAGTGAGTAGAATGGTTCATTGCAGTAGTACTGAATGACGGAGAGGTGCTGGTTCTGAGAGCCAGATATGAACCTTACGCCTCCATTCAGCAATTTTTCAGGTTCCCCACAtAATTGACTGTGGGGAACCCGAACTGTTGCTGAATGGAGGGGTGACGTTCATATCTAGCTCTCAGAACCAGCATCTCTCAGTCATTTAGTACCACTGCAATGAGCTGTACTACACTCTCTCTAAAAGAGTTAATGtccacctggttgtgctgctccagtttcaactgttcagcctgtggctatggaactctgacctgttTACTGGatatgctaccttgtcccggacctgctgttttcgactctctcactctaccgcacctgctgtctctaactctgaatgctctgctatgaaaagccaactgacatttactcctgagatgctgacctgttgcaccctctacaaccactgtgattattattatttgaccctgctggtcatctatgaacgtttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagccttgttcctctctaggtttcttcctaggttctggccttcctagggagtttttcctagccaccgtgcttctgcaactgcattgcttgctgttttgtgttttaggctgggtttctgtacagcactttgatatagctgacgtatatcagctgatgtaagaagggc

Function

NR:

description
complement C1r subcomponent precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256308 True 2692 lncRNA 0.53 8 11785487 11836170

Neighbor

gene id symbol gene type direction distance location
LOC118936286 LOC106575183 coding upstream 9454 11754136 ~ 11776033 (+)
LOC110509537 LOC106575188 coding upstream 37566 11737950 ~ 11747921 (+)
LOC110509555 LOC106575195 coding upstream 58233 11708849 ~ 11727254 (+)
iffo1b LOC106576644 coding upstream 77236 11683066 ~ 11708251 (+)
LOC110509388 LOC106576962 coding upstream 102731 11680241 ~ 11682756 (+)
tnfr tnfr coding downstream 1713 11837883 ~ 11858967 (+)
LOC110509543 LOC106576564 coding downstream 121602 11957772 ~ 11966128 (+)
LOC110509582 mlf2 coding downstream 144137 11927476 ~ 11985113 (+)
LOC110509600 LOC106576545 coding downstream 151083 11987253 ~ 12004723 (+)
LOC110537447 LOC106577011 coding downstream 169099 12005269 ~ 12053650 (+)
G224184 LOC106605850 non-coding upstream 7283 11777789 ~ 11778204 (+)
G224183 LOC106605731 non-coding upstream 7986 11776750 ~ 11777501 (+)
G224182 NA non-coding upstream 20034 11761948 ~ 11765453 (+)
G224177 NA non-coding upstream 33588 11751714 ~ 11751899 (+)
G224167 NA non-coding upstream 84132 11701052 ~ 11701355 (+)
G224225 NA non-coding downstream 72861 11909031 ~ 11909554 (+)
G224267 NA non-coding downstream 123122 11959292 ~ 11959895 (+)
G224294 NA non-coding downstream 180297 12016467 ~ 12016767 (+)
G224295 NA non-coding downstream 180737 12016907 ~ 12017156 (+)
LOC110520911 zyx other upstream 195143 11580308 ~ 11600483 (+)
G224052 gstk1 other upstream 349027 11433120 ~ 11436460 (+)
G224035 NA other upstream 393525 11391333 ~ 11391962 (+)
LOC110509074 LOC106576860 other upstream 611124 11166919 ~ 11174363 (+)
G223748 NA other upstream 741795 11041848 ~ 11043692 (+)
G224297 NA other downstream 184795 12020965 ~ 12022444 (+)
LOC110509826 LOC106576393 other downstream 423151 12259134 ~ 12357204 (+)
LOC110503596 LOC106576258 other downstream 532821 12368841 ~ 12430981 (+)
grik5 grik5 other downstream 824450 12497538 ~ 12664742 (+)

Expression


Co-expression Network