G224870


Basic Information

Item Value
gene id G224870
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11806137 ~ 11808096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257117
TCAAGTGGTAAGCATGCGTTTAACGAATTCTCACGATCCAGTTGTATCTCTCCCAGTATTATCATGTTGTATCATTTATTATTAGATCATTGTTTTGAGGAATCACCACTATTTTCATTCATAAATGCAATTTACACATAgctatttttaatatttttttttgtacaatGTGTCAAACAGTCCCTCTATCAACCATTGAGAGGAAAATTATATTTTCTGGAATATCCAACACCAAAAGTAAAATATAAACTAactaaaaaacacattttcaggaGCAATAGTCTGGCAAAGATGAAGTACTTTATAGTACTACTTGTACGCTACTATGGTTTTCGGTTGTCGTTTTTTCCCTGACAGAATACTACTGTAGCAACCATTGTTCTCTGGTTGTGTATTAGTTCTTTTGAAAGCATGTGAGCAACAAAAATTTGGCAAACTCTTGAGATTCATTATATTGCATACGCATGAGTTACTAATTGGGCGCATAACTACAGTAGCCTATACACAGGTCCTGAAAACCACTAAACcaaacaaaataaatgtacaatCGGCAGTTAAGTTTCAGAAATGGCAGATACATAGGTCACACAAATAGGCAAAACTATGGACATCGTCTGCCATGCAAGTCAAGTAAGACACAAACACTACTTCCATTGGGCCTATTGGATACTGTAGgtaacagtgtgtgtgtttttgttggtTTGATGTGCAGGAAGTGGGTTATTTGGTTATGTCCTCTCCAGATAAGGGACAGTCTATTGAACCATTCCTCCCTAACCCTGTACCCTCTCTACTAGAACGTACAAGAGTGtctgaacacaaccacaacacagtaAAGCTGCTCACTAATCAATCAAAAATGTGCTATGTTTTATTACACAGACCTGCCTTTAGGTGTGTCGAGAGTTAATACTCTATAGACTTTTGTCTGCACTCCTGAAAGAATACTCTATGTAGGTACAGAccgtctgtttctgtctgtcaatGTCAATCTAGCTaactgtccgtctgtctgtctgtggtacaAGAATAAAGATATACTAAAAGTCAGTGTCCCAAAAGTGGTTTCTGCCTTTTCCAGTATCCTTCCTGGCTTttcttattatctctctctatctctctcttaaaCACTACAGTCAGCgagtgagaggaagagggaggtaaAGGAAAAGGCAGGAATGCCAGTCAAGGCCTACATCAACTAACCCTGGAAAAAGCTACTGGCTACACTGATTTGGatcacaagtacacacacatgaCAAAATGATCATACTCTTAAACATGACCTTGTATTAGTAAGTAGTATTAATAATGGTAGTGGTATGAGGTAGGGGATCAGGAGGGGTTGTTAGGTATTGTATGTCAGTATCAATTTACAAATGTGGTACGCTCTCCAAAAGGTAACACGAACAAGCTTTGGCGTATCTGGATAGAAAGAACTGcttctctgctgctctctccttgcactccctctctctctctctttccctacaGTATGCTCCAgtcctctctgtccctgtgtcaCAAGGGGTTTCTtatctcctccctccttcattcccttcctgctctctcgctctcgctctctctttccctactgCACATTTCAATAATGTATGAGACGCAGAGGCAGGAGATAGTGAGTGAGACAGCACAccaaaacagaggaagaaagatGGATCAAAAAGAAGGGCAGGAGGACGAAGAGAAAAGAGAGCAACAACATCTACACACTAGCGTCATGTTTAAGTGCTAGATGGAAGACCTGGTGTGGAGGAAAAGGGGGCGGGACTGGAGTTTGGATTTGGGTCgatttgttttcttcttctctcctattCCGCTCTCATGTCTGTGTCCTGCCACGCTGGGATTACTCAATAGAAGAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257117 True 1885 lncRNA 0.41 4 11806137 11808096

Neighbor

gene id symbol gene type direction distance location
LOC110509520 lag-3 coding downstream 26869 11776055 ~ 11779268 (-)
LOC110509576 LOC106576947 coding downstream 68081 11727284 ~ 11741584 (-)
LOC110509335 NA coding downstream 191299 11613213 ~ 11614838 (-)
fam131bb fam131b coding downstream 257396 11503867 ~ 11548741 (-)
LOC110509245 LOC106576972 coding downstream 351771 11449258 ~ 11454366 (-)
LOC110509592 LOC100136300 coding upstream 17 11808113 ~ 11811663 (-)
c1r c1r/c1s coding upstream 11517 11819613 ~ 11825101 (-)
LOC110509614 ret1 coding upstream 50622 11858718 ~ 11862407 (-)
LOC110509511 ptn6 coding upstream 54893 11862989 ~ 11895102 (-)
LOC110509399 LOC106576265 coding upstream 87547 11895643 ~ 11950574 (-)
G224874 NA non-coding downstream 24410 11781410 ~ 11781727 (-)
G224869 NA non-coding downstream 52457 11752851 ~ 11753680 (-)
G224868 NA non-coding downstream 53347 11752418 ~ 11752790 (-)
G224867 NA non-coding downstream 55385 11750053 ~ 11750752 (-)
G224836 NA non-coding downstream 97889 11706135 ~ 11708248 (-)
G224899 NA non-coding upstream 8964 11817060 ~ 11819210 (-)
G224918 NA non-coding upstream 55714 11863810 ~ 11865070 (-)
G224919 NA non-coding upstream 57266 11865362 ~ 11865765 (-)
G224920 NA non-coding upstream 57841 11865937 ~ 11866284 (-)
G224931 NA non-coding upstream 82996 11891092 ~ 11897894 (-)
G224873 NA other downstream 9828 11795890 ~ 11796309 (-)
G223969 LOC106605840 other downstream 527509 11275917 ~ 11278628 (-)
G223942 LOC106576860 other downstream 631770 11172120 ~ 11174367 (-)
G224954 LOC106576536 other upstream 206830 12014926 ~ 12016101 (-)
G224988 LOC106605856 other upstream 263191 12071287 ~ 12081233 (-)
G225099 NA other upstream 528145 12336241 ~ 12340966 (-)
G225127 LOC106605865 other upstream 646292 12454388 ~ 12457791 (-)

Expression


Co-expression Network