G224225


Basic Information

Item Value
gene id G224225
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11909031 ~ 11909554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU256350
acacacataaacacacgtccacatccacacacacagagtaggTAAAAAAGGTTGCATTGTGCAGCGCTGTTCTGTACCCCGTCTACTACCTCGTTCCTCCTGAGAGCCGTCGTTGTAGTTCACAGGCTTGCGGGtcctctttccctttcccagGTTACGGGCCAggtcctcctgctgctgctcatAGTGGTGTCTCAGCAGTTTCTCCCAGTAGTCTGGGTCTACTGACTCCTCCTGTTTAAtcacctcacgctgcacctcctcctcctggacacacacacacaggttagcaatGATGGAAGAACTCGTATactaacacacccacacagcTTAGCCTAGATGGAAGAA

Function

NR:

description
chromodomain-helicase-DNA-binding protein 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256350 True 348 lncRNA 0.52 2 11909031 11909554

Neighbor

gene id symbol gene type direction distance location
tnfr tnfr coding upstream 50064 11837883 ~ 11858967 (+)
LOC110509655 NA coding upstream 100911 11791230 ~ 11808120 (+)
mrpl51 LOC100194563 coding upstream 118371 11788492 ~ 11790660 (+)
LOC118936286 LOC106575183 coding upstream 132998 11754136 ~ 11776033 (+)
LOC110509537 LOC106575188 coding upstream 161110 11737950 ~ 11747921 (+)
LOC110509543 LOC106576564 coding downstream 48218 11957772 ~ 11966128 (+)
LOC110509582 mlf2 coding downstream 70753 11927476 ~ 11985113 (+)
LOC110509600 LOC106576545 coding downstream 77699 11987253 ~ 12004723 (+)
LOC110537447 LOC106577011 coding downstream 95715 12005269 ~ 12053650 (+)
LOC110509740 LOC106605858 coding downstream 180347 12089901 ~ 12108140 (+)
G224189 c1r/c1s non-coding upstream 72861 11785487 ~ 11836170 (+)
G224197 NA non-coding upstream 99553 11808748 ~ 11809478 (+)
G224184 LOC106605850 non-coding upstream 130827 11777789 ~ 11778204 (+)
G224183 LOC106605731 non-coding upstream 131530 11776750 ~ 11777501 (+)
G224267 NA non-coding downstream 49738 11959292 ~ 11959895 (+)
G224294 NA non-coding downstream 106913 12016467 ~ 12016767 (+)
G224295 NA non-coding downstream 107353 12016907 ~ 12017156 (+)
G224296 NA non-coding downstream 110396 12019950 ~ 12020685 (+)
LOC110520911 zyx other upstream 318687 11580308 ~ 11600483 (+)
G224052 gstk1 other upstream 472571 11433120 ~ 11436460 (+)
G224035 NA other upstream 517069 11391333 ~ 11391962 (+)
LOC110509074 LOC106576860 other upstream 734668 11166919 ~ 11174363 (+)
G224297 NA other downstream 111411 12020965 ~ 12022444 (+)
LOC110509826 LOC106576393 other downstream 349767 12259134 ~ 12357204 (+)
LOC110503596 LOC106576258 other downstream 459437 12368841 ~ 12430981 (+)
grik5 grik5 other downstream 751066 12497538 ~ 12664742 (+)

Expression


Co-expression Network