G224308 (LOC106576519)


Basic Information

Item Value
gene id G224308
gene name LOC106576519
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12070216 ~ 12078021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU256447
CATTTATTCTGTAGTACTTAATGGATGTCTGGGAATGTACAATATCTGGGTTGGTTGAAAGAAGCAGCTCTCATTTCAGGTGGTATATTTAGATCCCATTGAACATAGCATAACTGTATCATACCAATTCTCTATACATGTAAATAcacattaaaatgtatttttccccCTTGGTGGATTTTGGCATTAGGCTCAGAGGTAAGTATGACATTTGGTGTACGGAAGATCTTAAACATTAAACAGAACATTAAACAGAAGGGAACAAACATTCTGAAAACTAGTCTGTTTGCAACATCAGGGCAGATATATTGTGACATATTACTCTCAAGACCAATGCAAGGTTTATATAcagacataacagtggatctcaCCATGTCCTCTGTGTCATCCTATAACTAATGGGCAGGGACTCCTGTTACTCAGAAACCCACTAACTGCTCTCTGTTAGAACATGATATTAATCAGAGAGCAGTGTCCCGAGGAGGGCTAAGTCCTGATTCTCCTATCACATCTCTGTCTGCTGTCCGATTCGCTCCCCCCACACAGGGCACAGTCATTTGTTCTCCTTCCTGTAAACCCTCTTCACGTGGCTCTGTATGGTCTGAATCCATTGTGGCATTGGCCACATTCATGGCACCTATATGTTTGTGAGCTGTCTGATGCTTCTTCAACATACTTGATGTGGTAAAGCATTTTCTACACACAGGACACAtgtatggcttctcccctgtgtgagtcCTCATGTGCACTATCAGAGATGTATTCTGGCTGAAACATTTGCCACAATCTTGGCATTGAtgtggtttctcccctgtgtggctCCTCATATGTAAGTTTAGGTGTCCACGCTGAGTAAATCCTTTGCCACAATCTTGACAGTGAAacggcttctcccctgtatgactCCTCAAATGCCTTTTCAGGAAAGTATCCCAAGCAAAATATTTACCACAAATATGACAACACTTTGCTCCAATGTGAGTTTGTAGGTGATCCATCATACTTTCTGTGGACTGACAGAATTTTCCACACACACCACAAAGATGTTCTTTATCCTGTGTGTGCGCTTGTACATGATTTAATAAAGACGCCATGGAGTCAAATTGCTTTCCACATACCTTACAACTAGGAGCAGCATCCCAGCTTACACTGGGTCTCGAGTGTGATTTTAGATGGTTCAATTTCCTGTCCTTAACACTATGAGAACTTT

Function

NR:

description
gastrula zinc finger protein XlCGF48.2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256447 True 1210 lncRNA 0.49 2 12070216 12078021

Neighbor

gene id symbol gene type direction distance location
LOC110537447 LOC106577011 coding upstream 16566 12005269 ~ 12053650 (+)
LOC110509600 LOC106576545 coding upstream 65493 11987253 ~ 12004723 (+)
LOC110509582 mlf2 coding upstream 85103 11927476 ~ 11985113 (+)
LOC110509543 LOC106576564 coding upstream 104088 11957772 ~ 11966128 (+)
tnfr tnfr coding upstream 211249 11837883 ~ 11858967 (+)
LOC110509740 LOC106605858 coding downstream 11880 12089901 ~ 12108140 (+)
LOC110509764 NA coding downstream 18906 12096927 ~ 12103146 (+)
LOC110537505 LOC106576414 coding downstream 76193 12154214 ~ 12241744 (+)
LOC118945814 NA coding downstream 165019 12243040 ~ 12247913 (+)
LOC110509826 LOC106576393 coding downstream 181113 12259134 ~ 12357204 (+)
G224296 NA non-coding upstream 49531 12019950 ~ 12020685 (+)
G224295 NA non-coding upstream 53060 12016907 ~ 12017156 (+)
G224294 NA non-coding upstream 53449 12016467 ~ 12016767 (+)
G224267 NA non-coding upstream 110321 11959292 ~ 11959895 (+)
G224309 NA non-coding downstream 6757 12084778 ~ 12088970 (+)
G224307 dedd2 non-coding downstream 21441 12099462 ~ 12108376 (+)
G224317 NA non-coding downstream 31760 12109781 ~ 12110023 (+)
G224328 NA non-coding downstream 44615 12122636 ~ 12123053 (+)
G224351 NA non-coding downstream 94997 12173018 ~ 12173579 (+)
G224297 NA other upstream 47772 12020965 ~ 12022444 (+)
mrpl51 LOC100194563 other upstream 279577 11788492 ~ 11790660 (+)
LOC110520911 zyx other upstream 479872 11580308 ~ 11600483 (+)
G224052 gstk1 other upstream 633756 11433120 ~ 11436460 (+)
LOC110503596 LOC106576258 other downstream 290970 12368841 ~ 12430981 (+)
grik5 grik5 other downstream 582599 12497538 ~ 12664742 (+)
G225451 NA other downstream 888011 12966032 ~ 12966533 (+)
LOC110509972 LOC106596703 other downstream 898152 12972069 ~ 12977823 (+)

Expression


Co-expression Network