G225019



Basic Information


Item Value
gene id G225019
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12136451 ~ 12139918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU257313
ccacaaagacatactgactccataccatatagacagacagactccatGCCAAGAAGACATACTGACTCCATGTcataaagacagactgactccatgccaCAAAGAAATACTGACTCCATGCCACAAAGAAATACTGACTCCATGTcataaagacagactgactccatgccatatagacagactgactccatgccaCAAAGAAAGACTGACTCCATGTCATGAAGACATACTGACTCCATAAAGACATCCTGACTCCATACCACAAAGGCATACTGACTCCATGCCATAAAGACAGACTGGCTCcataaagacagactgactccatgtcataaagacagactgactccatgccaCAAAGAAAGACTGACTCCATAACACAAAGAAAGACCGACTCCATGCCACAAAGAAAGACTGACTCCATGCCAcaaagacagactgactccataaagacatactgactccATACCACAAAGACATAATGACTCCataaagacatactgactccATACCACAAAGTCATACTGACTCCATAccacaaagacatactgactccataccacaaagacatactgactccataccacaaagacatactgactccacacCACAAAGACATACTAACTCCATAccacaaagacatactgactccataccacaaagacatactgactccataccacaaagacatactgactccataccacaaagacagactgactccatgtCATAAAGACAGACTGGCTCCCATAAAGACAGATTGACTCCATGCCACAAAGAAAGACTGACTCCATGccacaaagacatactgactccataaagacatactgactccATACTACAAAGATATACTGACTCCATAccacaaagacatactgactccatgaagacatactgactccataccacaaagacatactgactcCATGCCACAAAGAAAGACTGACTCCATGCCACAAAGAAAGTGACTCCATGCCACAAAGAAAGACTGACTCCATGTCATAAAAacagactgactccatgccatatagacagactgactccatgtcataaagacagactgactccatgcTACAAAGAAAGACTGACTCCATGTcataaagacagactgactccatgccaCAAAGAAAGACTGACTCCTTGCCACAAAGAAAGTGACTCCATGCCATAAAGAAAGACTGACGCCATGCCATGAAGACAGATTGATtccatatagacagacagactccatGCCAAGAAGACATACTGACTCCATGCcataaagacagactgactccatgccataaagacagactgactccataacacaaagacagactgactccatgtcataaagacagactgactccatgccaCAAAGAAAGACTGACTCCATGCCACAAAGAAAGTGACTCTATGCCATAAAGAAAGACTGTCTGCATGCCATAAAGACAGACTGActccatgCCAAGAAGACATACTGACTCCATGCCATGAAGACGGACTGACTCCATGTCataaagacatactgactccatgctataaagacagactgactccataccacaaagacatactgactccataaagacagactgactccataCCATAAAGACAGACTGAATCCATAccacaaagacatactgactccatacaacaaagacatactgactctataccacaaagacatactgactccataccacaaagacatactgactcCATAAAGACAGATTGACTCCATGCCACAAAGAAAGACTGACTCCATGccacaaagacatactgactccatacaacaaagacatactgactctataccacaaagacatactgactccataccacaaagacatactgactccatgccataaagacatactgactccataccacaaagacatactgactccatacaacaaagacatactgactctataccacaaagacatactgaATCCATGCCATAATGACAGACTGAATCCATGTCATAAAGACTGACTGACTCCATGCcataaagacagactgactccatgccaTAAAGACAGACTGAATCCATGCCATAATGACAGACTGAATCCATG

Function


NR:

description
PREDICTED: uncharacterized protein LOC106601753

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU257313 True 2057 lncRNA 0.42 3 12136451 12139918

Neighbor


gene id symbol gene type direction distance location
trnav-uac NA coding downstream 6205 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 23586 12111383 ~ 12112865 (-)
LOC110509720 LOC106576492 coding downstream 46980 12087174 ~ 12089471 (-)
LOC110503589 LOC106576508 coding downstream 49503 12077084 ~ 12086948 (-)
LOC118945807 LOC106605860 coding downstream 64164 12070204 ~ 12072287 (-)
LOC110509802 LOC106576373 coding upstream 292251 12432169 ~ 12438782 (-)
LOC110503604 LOC106605712 coding upstream 530571 12670489 ~ 12673805 (-)
LOC110505096 tigit coding upstream 548561 12688479 ~ 12690874 (-)
LOC110509848 LOC106575652 coding upstream 551714 12691632 ~ 12700659 (-)
LOC110505108 LOC106578919 coding upstream 587146 12727064 ~ 12732403 (-)
G224953 NA non-coding downstream 28291 12017593 ~ 12108160 (-)
G224956 NA non-coding downstream 82682 12020965 ~ 12053769 (-)
G224959 NA non-coding downstream 86914 12045392 ~ 12049537 (-)
G224955 NA non-coding downstream 118981 12017257 ~ 12017470 (-)
G224978 LOC106595066 non-coding downstream 140004 11994218 ~ 11996447 (-)
G225032 NA non-coding upstream 23805 12163723 ~ 12169705 (-)
G225048 NA non-coding upstream 87640 12227558 ~ 12227877 (-)
G225061 NA non-coding upstream 126457 12266375 ~ 12308268 (-)
G225068 NA non-coding upstream 139613 12279531 ~ 12280566 (-)
G225096 erf non-coding upstream 185946 12325864 ~ 12328067 (-)
G224988 LOC106605856 other downstream 55218 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 120350 12014926 ~ 12016101 (-)
LOC110509592 LOC100136300 other downstream 327105 11808113 ~ 11811663 (-)
G224873 NA other downstream 340142 11795890 ~ 11796309 (-)
G224869 NA other downstream 382771 11752851 ~ 11753680 (-)
G225099 NA other upstream 196323 12336241 ~ 12340966 (-)
G225127 LOC106605865 other upstream 314470 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 332381 12472299 ~ 12473060 (-)
G226124 NA other upstream 926955 13066873 ~ 13067357 (-)
G226187 NA other upstream 1037260 13177178 ~ 13180272 (-)

Expression



Co-expression Network