G225096 (erf)


Basic Information

Item Value
gene id G225096
gene name erf
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12325864 ~ 12328067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257412
aaTTGTCATGCTCATCGCTTTTGTACAGTGTATGGGTGATTGACATGTGATAGGCTATATGTGGTCAGAGTGGCGGTTATATAGTGTATGGGTGATTGACATGTGATAGGCTACATGTAGTCAGAGTAGTGGTTATACAGTGTATGGGTGATTGACATGTGATAGGCTACATGTGGTCAGAGTAGTGGTTATACAGTGTATGGGTGATTGACATGTGATAGGCTACATGTGGTCAGAGTAGTGGTTATACAGTGTATGGGTGATTGACATGTGATAGGCTACATGTAGTCAGAGTAGTGGTTATACGGTGTATGGGTGATTGACATGTGATAGGCTACATGTAGTCAGAGTAGTGGTTATACAGTGTATGGGTGATTGACATGTGATAGGCTACATGTAGTCAGAGTAGTGGTTATACGGTATATGGGTGATTGGCTACATGTGGTCAGAGTAGTGGTTATACAGTGTATGGGTGATTGACATGTGATAGGCTACATGTAGTCAGAGTAGTGGTTATACAGTGTATGGGTGATTGACATGTGATAGGCTACATGTGGTCAGAGTAGTGGTTATACAGTGTATGGGTGATTGACATGTGATAGGCTATATGTGGTCAGAGTAGTGGTTATACAGTGTATGGGTGATTGACATGTGATAGGCTATATGTAGTCAGAGCAGCGGTTGGTTATACAGTGCATGGGGAAGCCATACGGGGTCATGGAGGTCAATGCCATAACAGTATAAGGGGCTTGTGTTTGGGGTGTTTGAGTGAACAGTCTTTTTTGTTTAGTCACTGCCATTATATGGGCAATATTATCACCACCATGGCAGGAATATGGGGTTTGAGTTGGTGTCAATAGAGTCCATGTCCTTTCTGGTCACTGCCAAAACAGTGTATTGGGAGATAGGGTGAGTGCCATtacaataggcctacagtatacaGTGTATTGGGAGATAGGGTCAGTGCCAATacgataggcctacagtatatagtgcttTAGGGGCTAGAGCTGGTGTCATAGTCATAACAGCCAGCTTATGTCAAGCAGACGTGCACAACGTAACAATAAACCTATATCTGGGGCCGAAGCCCGAGCTTGGGGAGGAATTGGGGCCTGGATCACTGCCATAAGACAGCCATGTGCATTAAAATCAGTGTGTAAACAGCACATGGAGCAGGACACGCTTGGTGTTATTGAGTTTCCTTACCGGAGTGCCCTGCTCAGCTTGTCGTAGTTCATCTGGGGTTTGCACTTGCGGGCCCCCCATAACCGGGCCACCTCGTCAGGGTCCTTGATGACAAACTCTCCATAGTCCCCCTGCCAGGCGATGACATCATGGTACTCCTCCTTCCTCAGCAGCTCCAGGATGAAGTGCCACAGCTGGATCTGTCGCGAGCCGGGGCTCgactcaggtttgtaggcccAGTCTGG

Function

symbol description
erf Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in craniosynostosis. Orthologous to human ERF (ETS2 repressor factor).

NR:

description
ETS domain-containing transcription factor ERF-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257412 True 1433 lncRNA 0.47 2 12325864 12328067

Neighbor

gene id symbol gene type direction distance location
trnav-uac NA coding downstream 195618 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 212999 12111383 ~ 12112865 (-)
LOC110509720 LOC106576492 coding downstream 236393 12087174 ~ 12089471 (-)
LOC110503589 LOC106576508 coding downstream 238916 12077084 ~ 12086948 (-)
LOC118945807 LOC106605860 coding downstream 253577 12070204 ~ 12072287 (-)
LOC110509802 LOC106576373 coding upstream 104102 12432169 ~ 12438782 (-)
LOC110503604 LOC106605712 coding upstream 342422 12670489 ~ 12673805 (-)
LOC110505096 tigit coding upstream 360412 12688479 ~ 12690874 (-)
LOC110509848 LOC106575652 coding upstream 363565 12691632 ~ 12700659 (-)
LOC110505108 LOC106578919 coding upstream 398997 12727064 ~ 12732403 (-)
G225061 NA non-coding downstream 17596 12266375 ~ 12308268 (-)
G225068 NA non-coding downstream 45298 12279531 ~ 12280566 (-)
G225048 NA non-coding downstream 97987 12227558 ~ 12227877 (-)
G225032 NA non-coding downstream 156159 12163723 ~ 12169705 (-)
G225019 NA non-coding downstream 185946 12136451 ~ 12139918 (-)
G225088 LOC106576393 non-coding upstream 27748 12355815 ~ 12360793 (-)
G225148 NA non-coding upstream 85526 12413593 ~ 12414411 (-)
G225124 LOC106576258 non-coding upstream 100761 12428828 ~ 12430948 (-)
G225170 LOC106576357 non-coding upstream 142443 12470510 ~ 12472088 (-)
G225177 NA non-coding upstream 150197 12478264 ~ 12480006 (-)
G224988 LOC106605856 other downstream 244631 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 309763 12014926 ~ 12016101 (-)
LOC110509592 LOC100136300 other downstream 516518 11808113 ~ 11811663 (-)
G224873 NA other downstream 529555 11795890 ~ 11796309 (-)
G224869 NA other downstream 572184 11752851 ~ 11753680 (-)
G225099 NA other upstream 8174 12336241 ~ 12340966 (-)
G225127 LOC106605865 other upstream 126321 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 144232 12472299 ~ 12473060 (-)
G226124 NA other upstream 738806 13066873 ~ 13067357 (-)
G226187 NA other upstream 849111 13177178 ~ 13180272 (-)

Expression


Co-expression Network