XLOC_021868 (BX005254.2)


Basic Information

Item Value
gene id XLOC_021868
gene name BX005254.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36150430 ~ 36154411 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043342
TCGGACTTCTCATATGTTTTCGACTCTTCGAAgaactaaacattaacttgttCCTGTAGATAATTTTCTCAAGActtcatgcagtgtaaaaactgCAAATTCAGCACTTCAAGTGAAGATGTCCTTCTGAAGCACTATCAGCTACATCATCATAGAATGTCCAACTGGCCCTGTCTTTACACGGAGTGTGTTTGTGCTTTAAAAACTGCAGAAGTTAATGCAGAAGAGACATGGCAGCCATAAGTGAATAAGCCTGCACTCTTTTTTCAAGAACAGATCTGTGAGGAATTTTTCCGCATCACCAACAAAGACCTTCTAGGAGTCTCCATGGCAGCCACTGACAAGTACACACCAAAGCTTCTGAAATTATACAGAGCCAGAAAAGGAGCGTTTGGACATGAAATGGAAGAGCTCCTGGAAAGACTTGATGAAAGGACAACAGAAATTGTTAATCACAGAAGGACTTCTGCTTTAGAGGGCCTGCCTTTGTTTCTTCGAGAGAAACAAACTAACCTTTTCAAGAAATGTAAAGAAACTGAAGATAGAACAAAGGGCGTATCAGTTGGCATTCTCTATGTTACGGAAGATGACTACCGGGCAGCATCACCAGTGATCCAGAACATTGCTGTTGTACTGGAAGAGGTTGTTGTTTTGGAAGACATTCCAGATACCTCAAGTGCTGTAGCATACCTCTTTGGCCTTCTTCATGCACTCAACTTTTCCTATCCCAAAGAACTCCGGTACACTTTTGACACAATTCAGAATGTTTTCATGGAGCTTGGGACTGGATGTACGCAACGTTAGCTTACTCTTAAAAACAAGATGTTAAactaatactgtaaacagtgttgtgtCAATGGTCTGATGTTACAAAGACCTAATGTACAATTTGAGTACTAAATCTGATTCATGAGAGCCACTGTTTAGGCACTGTGTTCAGTTAAATGGGTAACATttcataataactacacactatgaatcatttattaagcattagcaaat

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043342 True 1002 lncRNA 0.40 6 36150430 36154411

Neighbor

gene id symbol gene type direction distance location
XLOC_021860 hoxc3a coding upstream 1059 36087219 ~ 36149371 (+)
XLOC_021867 hoxc4a coding upstream 17867 36130883 ~ 36132563 (+)
XLOC_021866 dre-mir-10b-2 coding upstream 20338 36130001 ~ 36130092 (+)
XLOC_021865 hoxc5a coding upstream 29919 36118738 ~ 36120511 (+)
XLOC_021864 hoxc6a coding upstream 33523 36115541 ~ 36116907 (+)
XLOC_021869 hoxc1a coding downstream 23693 36178104 ~ 36190988 (+)
XLOC_021870 hnrnpa1b coding downstream 152128 36306539 ~ 36310418 (+)
XLOC_021871 NA coding downstream 162938 36317349 ~ 36317913 (+)
XLOC_021872 NA coding downstream 164767 36319178 ~ 36319588 (+)
XLOC_021873 copz1 coding downstream 186109 36340520 ~ 36354106 (+)
XLOC_021861 mir196a-1 non-coding upstream 62234 36088091 ~ 36088196 (+)
XLOC_021854 BX465853.1 non-coding upstream 352151 35790808 ~ 35798279 (+)
XLOC_021852 NA non-coding upstream 420368 35729255 ~ 35730062 (+)
XLOC_021851 NA non-coding upstream 422908 35723438 ~ 35727522 (+)
XLOC_021874 NA non-coding downstream 210494 36364905 ~ 36365917 (+)
XLOC_021875 NA non-coding downstream 263708 36418119 ~ 36420278 (+)
XLOC_021876 NA non-coding downstream 303936 36458347 ~ 36488629 (+)

Expression


Co-expression Network