G225088 (LOC106576393)


Basic Information

Item Value
gene id G225088
gene name LOC106576393
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12355815 ~ 12360793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257401
CCTGATTACAGCTTAATGACAAgtttgaaaaacaaacaaaagaattGAAGAGAAATTCAATGTTACATCATGGTATTAAATCTCACCTCTCTGTGTGTTATATAACCGCATGGGGGGGGGGAGACCTTTACATAGTAAAACAATACAAATCAGTTTTTCTTTTAAATGAAACAATCCccaaaatgaaacaaaaatatacaaGACCAAGAGAGAAAGTAACATTGTAAAATAgaaatgacaatacatgacaagatCAAATCATACAtatccccctccaccctccctccccaaTAAAATCCTCCCCCTGCCAACCTCTTCTCTGTCGCCATAACAACCCCTCTCAGAATGAATATTACACTTTAGTTTATATTACAAATGTTAAAACCACATGAAAGACTGAGGAGGGGGCAGGAGCTGGTAGGGGGTCATAACAGAAGCATGGAGGAGAGGTCTAAGTCACGATGACAGTGTGATGTACAGTTCACAACAACCCTAAAGCAGTAGTAACTCAACCATGGACCAATAATGAGAAGGATGGGGAGGTAAGTAAATCCAACCATAACAATAAGAACAACAATAATAAACAGCAATATCGACATCAGAAAGGAAAAGAACATTGAGGGTATTTTTAATCTTTGCTAAAGAAATGTTATCCTTCTACACTTTCTCTAGCTTCTCCTGACTGCCGACTCAGACATGAGACCTGGGAATTGCCATCCCACACCATCCTGATAAAAGATCACGCTGCAGTTAACAGTCAGGTAGACAGACAATGCTggcaatagagagaaagagggatgaagaGTGAagcagagaaaaaaagagaacaaGCAGAATAATGCCCAGTCTGTTGCTTAGTTATGATGAGTAGTTATAAGGCAGCTGTCAGTTTCAATAGACACAGGGTGAGGTGGAggtgagggaaggggacagagagtgtgtgtggtcaGATATACAACACCACCAGGATGGACAATTACAGCAGTCCGATGATTGTGACTTGCTCAGCCACACACCTGCCAGTCTGGAGGCCTGCCATCCCAGAGGCCCCTGTTCTTACTGGTTGGTTAAGTCTTTGATTGCCCTGAGCCAATCAGAGGGCCGTTTGGCTCAGTCTCCAGACCTCTAATGCTCCAGGATGTCAAAACATCAAAGCAGCAAAACAGTGCGGGTAGAATGTGTGGGAGGGGTTTGGaaatgtgagtctgtgtgtgtgtgtgtttgagatagTGGGCAGGGTATTCCAGGTGAAGTCTAACGTCATCTTTCCAGCCTCCACTGTTATCTGTACAGCAATCATTAACCTCAGCCTCCACCCCCACCAACCTGCTGGGAATATAGCTAATGCAGTCACGATTAGTAAACTGTCCGCTTTAGATAACCGGCTTAACTGGGTAGAGCTGAGAAATGACAGGATTTCTCATCGACTAAAATCCCCAGTCCTGGCTAACCCTGAGCTCATTCACTTCCACTGGGGCCGGAGGTGAGTTGTGAGGTCCATTAGTGAGGTGAGGTCCCCATAGAGGTGCACTATCAAGGTGAGACCAGCCCAGAGGGAGACTGGGGACAGGTGACGGTGGTCAGGTCTTCTACAAGCTGAGAGGGAGTAGCGGACCGTGATGGCAGACAGAATAGTCATGTTCAAATGACaactgctgtatatattcagtgtACTACAATGCAGTTCTTTCACGATTCTCATTATTTTCATCATTTTGTCTGTCTATCCGGTGTCATTTGTTGTCCCTTGGTCATAACAAAACATTTGGACTCCTACCCATCCCGTTGTCTCCCTCCCCTAAGGAAGTTTACCCGCTGAGAAACAGGATATTCTCTCCCCTCGCCTACTAGAACGAATCACTCACAAAAACATCCTGAATCTGTCATTTCCTTAAATGGCATGTTGTTTTAGTTTTTTATATCAGTTTGGAAtttcatatataatatatactgagcaaaaatataaacgcaacatgcaacgatTTCAAagatttactgagttacagttcatagaaggaaatcagtcaatttacaTAAAtttggtcctaatctatggacttcacatgactgggaaaagAGATACTCATCGAttcgtcacagatacctttttaaaaaaaaggtagcatagttgatcaggctgttgattgtggcctgtggaatgttgtcccactcctcttcaatggccgtgcaaagttgctggatcttggcgggaactggaacacgctgtcgaagacgttgatccagagcataccaaacatgctcaacgcgtgacatctggtgagtatgcaggccatggaagaactgggacattttcagcttccaggaatagtgtacagatccttgcgacatggagccgtgcattatgctgaaacatgaggggatGGCAGTGGAataatggcacgacaatgggaaATCGGTGTCTCTATGCATTCAAATAGCCATCAAtaaatgtaattgtgttcgttgtctgtagtttatgcctgcccataccataaccccaccgccaccatggggcacctctgttcacaacgttgacatcagcaaaccgctcgtccacacaacgccatacacgtggtctgcggttgtgaggccggttggccgtactgccaaattctctaaaatgacgttggagcggcttatggcagagaaattaacattaacttCTCTGGTAAcacctctggtggacattcctgcagtcagcatgccaaattcacgctccttcaaaacttgagacatctgtggcattgtgttgtgtgacaaaactgcacattttagagtggccttttattgaccccatgcgcaaggtgcacctgtgtaatgatcatgccgttaaatcagcttcttgatatgccacacctgtcagctggatggattatcttggcaaaggagaaatgctcactaacagggatgtaaacaaatgtgtgcacaaaatttgagaggaacaagctttttgtgtgtatggaaaatgtctaagatcttttatttcagctcatgaaacatgggaccaacactttacatgttgcatttatgtttttgttcagtgtataaataTATAGTTTATATGAGTGTGCATATCTCAGTAGGACTTTctcgttttatatatatatattttttagtttAAAACACACTATAAAACAAGGCATagagaggcagtgtgtgtgtgtgtatatatatgtatatgtgtgtgtgtgtgtgtctacaggtgTGCTTGCATATGCGGTGTTGTGTGCGTATTCTGCTGGTTTAGTTAACACTATGAGACTATGGTTGATAGAACAGGAGTAAGGGATTTGGATCTTTCAAGCATGGTCCACAAAAGAAAGGGAaggaagtaggagagagagagaaaagattacagaaagagaggaaagTACAAAAGTGATGACAGAGGAGTGTTAGAGAGAAATAAAGTGTGTGTTGAATAGCAGTACCCTTCAGTAGCAGTCCAAGAGCAAAGCCATGTCCCAAAGTCCTGCCACTGCCCGTTTCCCcagcagctggtgtgtgtgtgtctgtggcatCCCTGAGTGGAGTGGCCAGTGTTGCGAGGAGGAGTCTTTGCCAGTTCACCACGACTAGGTCCCACAGCCCCCAATCGACAGCCCAACTTTCCTGTGTGTCTGTTATGGGTAAGAACAGGGGGGATACTATTACATAAATAATAGCGAGAGTCGCACACTATGTATAAACTCCCggtcatttattgggtaaatcaccaacgtttcggcatcactgtgccttcttcaggatCATACTTTTACACCGATGCGTTCCTCCTctcagtcttctctctctctctgtgtctgataCAGGTACAGGCACTTGTAGAAGCCTTGTCTTCCTCTCTATACAAAAATAAAATGGGAGAAATCTCATCCTCCATGTCTGCAGGGCTGGAAAGCCAGGGGGCTGGGCTGTCTGAGTTGGGATCCCCTGAGGAGAAagacagactctaaccctagagGGGGGGCCAGAAGGCAGGAAAGGTGAGGCAAAAGAGCTGGGTCAGGAGATGTGGGGCAGTGCTGGGCTGGAGGCTGGATATGAGGCTGACAGTGGGCTGGACAGGAAACTGGCTTGGGGGTTCCATCCAGACACAAGCAGAGAGTAGCGTCCCCTCTGGTTCTGCCCCTGGTTTAAGTCACTGAGTCTGGGCTTGCTTGGACCAAAAGTCCCCTCTCTTCTTCAACAGTCTGAGGGAGTCTCCTTACAGTAGAAGGTAAGGGCTTTGGGAGGAGGGTGTGGACTGCGTCAGGGTTTGGAGTTTGATTAGGCCCAGGTTTAGTTTGAGTTAGGagagaactgtctgtctgtcagagtggcaGGAGGACCTCATGAGGCATTTACACTGTCCTGAACCACCACGGTCTGCTAGCATTAGTGTTTCTATgtatctctatgtgtgtgtggatCAGCATCAGCAGTCCTTGTTCTCCAGTGACAGTTGGGCGGTGGCCTGGTGCAGGTCCTGGTTCACCCCCCTCTGAGCCAACGGGAGGGAACACTCATACCCCCccagggctgggggactgggggcgCTGCCAGCCCCGTTCTCCTGCATCCCTCCATtcttctccgtctctctttccctctccttctcccctcgtACTTTCTTGTCGTCCTGCTCTTCCATGGCCTCCATTCGTTGGTCTTCACTCCAGCGCCGTTTGAAGCGCAGCTTGAGTGGAATGCACTTGGTCTGCCCCTGGGCGGGGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257401 True 4717 lncRNA 0.31 2 12355815 12360793

Neighbor

gene id symbol gene type direction distance location
trnav-uac NA coding downstream 225569 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 242950 12111383 ~ 12112865 (-)
LOC110509720 LOC106576492 coding downstream 266344 12087174 ~ 12089471 (-)
LOC110503589 LOC106576508 coding downstream 268867 12077084 ~ 12086948 (-)
LOC118945807 LOC106605860 coding downstream 283528 12070204 ~ 12072287 (-)
LOC110509802 LOC106576373 coding upstream 71376 12432169 ~ 12438782 (-)
LOC110503604 LOC106605712 coding upstream 309696 12670489 ~ 12673805 (-)
LOC110505096 tigit coding upstream 327686 12688479 ~ 12690874 (-)
LOC110509848 LOC106575652 coding upstream 330839 12691632 ~ 12700659 (-)
LOC110505108 LOC106578919 coding upstream 366271 12727064 ~ 12732403 (-)
G225096 erf non-coding downstream 27748 12325864 ~ 12328067 (-)
G225061 NA non-coding downstream 47547 12266375 ~ 12308268 (-)
G225068 NA non-coding downstream 75249 12279531 ~ 12280566 (-)
G225048 NA non-coding downstream 127938 12227558 ~ 12227877 (-)
G225032 NA non-coding downstream 186110 12163723 ~ 12169705 (-)
G225148 NA non-coding upstream 52800 12413593 ~ 12414411 (-)
G225124 LOC106576258 non-coding upstream 68035 12428828 ~ 12430948 (-)
G225170 LOC106576357 non-coding upstream 109717 12470510 ~ 12472088 (-)
G225177 NA non-coding upstream 117471 12478264 ~ 12480006 (-)
G225193 NA non-coding upstream 163872 12524665 ~ 12524898 (-)
G225099 NA other downstream 14849 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 274582 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 339714 12014926 ~ 12016101 (-)
LOC110509592 LOC100136300 other downstream 546469 11808113 ~ 11811663 (-)
G224873 NA other downstream 559506 11795890 ~ 11796309 (-)
G225127 LOC106605865 other upstream 93595 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 111506 12472299 ~ 12473060 (-)
G226124 NA other upstream 706080 13066873 ~ 13067357 (-)
G226187 NA other upstream 816385 13177178 ~ 13180272 (-)
G226224 NA other upstream 863091 13223884 ~ 13224515 (-)

Expression


Co-expression Network