G225124 (LOC106576258)


Basic Information

Item Value
gene id G225124
gene name LOC106576258
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12428828 ~ 12430948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257445
TTTGTACATTTTTGGAGTTTCACCTTGTGTAATGGCATCTTTTAAAAGTCAATACAAGTCGGGTTACACATTGTTCCTTATCAATATTATAGCGAGTCTTCTGACTACAGTAAATAATAtgtacaacacaaccaagtctTGCACAAAGACAACCAATATTATACCCAACCACTCTTTTTACTGCCCTGCCCCCTCCAGGCGTATCTCCTCCCACCCCAAAAAGGCCTGGAGAGAACAGTAagggaggaagaaaggaaggaaaagAGCTGGAAGGAGGAGGCTATAGAATCAAACTTACTagcaggggagtgagagagagcggtATACAGGGTTGTCCAAAAACATACTTATTACACTTAAATGAATACAAATGTCAACCCTCTTCTCTTTGTtatccctcattgaaatgaataAAAATATTTGTCACCCCAGGTCCTTGCTGGGGTGTTGAAAGGGAagacaaagagagggaaagaggcacAGGTGAGGACCATCTCTCTCACAGGTCCCATCCCATTTCCCCTCAAATAAGAAAACAGGTTGAGAGAGAATCTAATGACATTGATACCAGCCCGTAGCAGGGATCAGGTCCACTATAACAATGAGAGGAGTAATATAAGTAACAGTAATACAATAATAACATAATGAACTGCAAAGTTACATgtgtttgattaaaaaaaaacatgtttgtagTCTTTAAAATAAAAAGTTAGATAATAAAACTGCTTGGCATTAGAAGTAATAGGCCTGTCAGCCTGACTCCTCTGGGATCTCAACTGAAGTCCACAAATAGATAAAACATGGTTGCAGTGACCGAGTGAGAAATGTAGAGCCATGATGTGCCCATCGACTCATTCTCCCCGCCTCCTTCCCTCATGGCGAGCGAATCAGACTAGCAGGAACGCTTGGTGCATCTTTACTGGCATCTTCTGTAGCCAATCATGGGAAGTGAGGGCGAGGTCCTAAACTCTCTCCAGTCCCCCTCACAGACCTGTCCTGAAGGTATGCTTCTATGATTCAAAGTAGAGAAAAATCTAACAATAAAACAAGGATCCTTCTGATCCCTCACCATCCAATGGCATCATCTCAAGCCAGTGGGGACCCAGCCCCCTAATGTCCAGCAGAAACAAATGAGTCAATGGGAGAATTAAGAGCCAGACCCTCTTCACCAaccaaaaacaacaaagtgagTCCGGTTAGAGTCAGATAAATGACCTTCAAACAGTCCCACTACGTGATATGTTATTCAGTCTGAAAGATGGGCCCTGCTCCAAGGCAATGGGTAACAGCTGGAGAGTTGTTATTGTATAGTCTATAGTCCACTGGCATCAATGGAAGTTTACAGGGATAATATTAATATTACGAACAAAGTGCTAATTCAAGTGTGGGTATTGGAGTTTGGGTTCatcagctgtgtgtctgtctgcctgtctgtctgtgtgtgtggcatttgaaatgtaattttttttggAGAGGGTGAATTACACTTAAAAAAATAACCTTTTAAGTTTTAAACAATTCCACCTCTCTGACACAttttgcaaacacacacacacacacacacatcctctttctttgtctctccaCTTGCTCTTTCTGACCTGGCtctctggagaaagagagagagacaggtccagATATGCACACAGACAGAGGGGTGTAGCTTCAACAAAATTAAGAAGAGGCGGGATTTGGGGAACTGGTCCATCGCTGATTGGTCAATCCAACCTGTCAGCATCCTTCATCTAGAAGACTCCTGCGAATCCCTCAGCTCCTCTGGactaccctccctctctcgatCCGCCTCCTCTCCCAATGGCTCCGCCCCTCCTCCTGTCCCTTCCCCTGATTGGGCGCCAGACGGTCCGGGGAGCGAGGAAGCCTCGTTGGTCTCAGAGGGGACGGCAGTCTGCATGATCTTCTGTCGGACCTCCCTGATCTTCAGCTGCAGACACACCTTGGTGGGGAAGATGTCTGAGTAGCGTGCCTGGAAGGCTGCCGTGGCCTGGGCTGGAGAGCGgacaggagaaggaggaagacagagaggaagtGTTGATTATTGTTGTTTGACTAGgaatgtagaaaaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257445 True 2089 lncRNA 0.38 2 12428828 12430948

Neighbor

gene id symbol gene type direction distance location
trnav-uac NA coding downstream 298582 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 315963 12111383 ~ 12112865 (-)
LOC110509720 LOC106576492 coding downstream 339357 12087174 ~ 12089471 (-)
LOC110503589 LOC106576508 coding downstream 341880 12077084 ~ 12086948 (-)
LOC118945807 LOC106605860 coding downstream 356541 12070204 ~ 12072287 (-)
LOC110509802 LOC106576373 coding upstream 1221 12432169 ~ 12438782 (-)
LOC110503604 LOC106605712 coding upstream 239541 12670489 ~ 12673805 (-)
LOC110505096 tigit coding upstream 257531 12688479 ~ 12690874 (-)
LOC110509848 LOC106575652 coding upstream 260684 12691632 ~ 12700659 (-)
LOC110505108 LOC106578919 coding upstream 296116 12727064 ~ 12732403 (-)
G225148 NA non-coding downstream 14417 12413593 ~ 12414411 (-)
G225088 LOC106576393 non-coding downstream 68035 12355815 ~ 12360793 (-)
G225096 erf non-coding downstream 100761 12325864 ~ 12328067 (-)
G225061 NA non-coding downstream 120560 12266375 ~ 12308268 (-)
G225068 NA non-coding downstream 148262 12279531 ~ 12280566 (-)
G225170 LOC106576357 non-coding upstream 39562 12470510 ~ 12472088 (-)
G225177 NA non-coding upstream 47316 12478264 ~ 12480006 (-)
G225193 NA non-coding upstream 93717 12524665 ~ 12524898 (-)
G225194 NA non-coding upstream 95007 12525955 ~ 12526228 (-)
G225195 NA non-coding upstream 95449 12526397 ~ 12526741 (-)
G225099 NA other downstream 87862 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 347595 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 412727 12014926 ~ 12016101 (-)
LOC110509592 LOC100136300 other downstream 619482 11808113 ~ 11811663 (-)
G224873 NA other downstream 632519 11795890 ~ 11796309 (-)
G225127 LOC106605865 other upstream 23440 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 41351 12472299 ~ 12473060 (-)
G226124 NA other upstream 635925 13066873 ~ 13067357 (-)
G226187 NA other upstream 746230 13177178 ~ 13180272 (-)
G226224 NA other upstream 792936 13223884 ~ 13224515 (-)

Expression


Co-expression Network