G225170 (LOC106576357)


Basic Information

Item Value
gene id G225170
gene name LOC106576357
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12470510 ~ 12472088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257498
CAGGTATTTTCGCTGGCGAGCCTGACGCAGCACTGGACGAGGCGGCGGGTGGAGACAGCATCCTCTTGGGGGCGCGGGGGCTTCCCTGGGGGGGTGTGGCTGCTCCTGCCCCAGTCCCTGGTTCCCCGCGGTGCTGGCGTCGGTGGTAAAGGTACTGGGTGGTGTTCATGAAGCTCTGGccacactgggaacagtggtGGAGGGGCTCGTTCAGGCCGTGCTTGTCCCTACGGTGGGCACTGAGCTCTGGCTCTTTACTGAAGCTGGCTCCACACTGGGCACACAggaaactctggaccaccttggGCACCTGAACCGGAGCACAGGTAGAGACAGTGGAAGTAGAGGAGGTTTCATTCTGGTTCTGCTCCTCAGTTCCATTGTTCTGGGAATCCGCCACCCCCGCTGTCTCCTCTTTAGACTCTTCCACCATCTCTTCCACCACCTCTTGCTGCAGTGTTACTATTTTGTAATCCTGGTAATCTGCATCCTGCATCTGTCCTCCCTGGGCCTGGGTTTGTATGACCCCCTCCTTGCCTTTCTCCTTGTGCTGCTTGCGGTGGTAGAGGAAGAGGGTGGTGTTGAGGAAGCTCTCCCCACACACGGTGCAGTGGTGCAGGGCTTCCTTGAGGCCATGCTGGGACTTGCGGTGGGTGACCAGCTCAGACACCATGCCGAAGCTGGAGCCACAGTCCACACACAGCAGGCTGGACGGGGGCTTGAGCTTCTTGGCTGCCTTTATCCTGTAGAAGTAGGATGTCTGCTCAGGGTTATCGGCTGGGAGGTCCTGGGAGGAAACGGGGTCTGGGGGGTCCTGGGAGGGAGCGGGGTCTGGGATGGACTGGCTGTCTGGTGCAGACTGGGCCTCTGTAGATGAATGAGCTGCCTGAGCCTGGATCTCAGAGGCTTTAGATCCAGTGGATTCCCCTACGCTCTCTGTTTCTGGCTCTTCCTCGCCTCCTTCCTGCCCTCTGTTGGTGGCGTTTGGCAGATACATGTGATCCAGGGTGGCTGATATGTCCTCTGCACTCAtcccatcctcctctttctctgctGACAGCTGAGACTTCACTACATCCTGCTCCTGCTGGGTTTGTTGTGCCCTCTCCTgactccttcctcttcctctgccccctcctcctTCTTGGTCATCCGTTGAGTTTGGTTCGTTTGGTTCATCTGGACCCAGGTCCACCTCCACTTCAGCCTGACTGtgcttcccctctccctctgggGCCAGTTCTGATCCAGATCCAGAGCCGGTCTCTTCTGGTCCTGGTTGGGTGGGTCCTGCCTTGGTCTGCAGACACTGACCATGTTTTCGGTGCTGCTGCCAGAGGATCAGGGAGTGGAACAGGGCGTCACAGTCTCCACACTGGTACAGGATCTTGGGCTGATCTCCTGAGGAAGGCTTATTTGGGCTAGCCATGGCCAGACCTGGTGCACCAGAGCTGGGCAGCACAGAGGAGACACTGGCCTTGGTCTGAGGGGCAGGAGATGGAGCAATGGGCTGGGTATATATCtg
>TU257499
CAGGTATTTTCGCTGGCGAGCCTGACGCAGCACTGGACGAGGCGGCGGGTGGAGACAGCATCCTCTTGGGGGCGCGGGGGCTTCCCTGGGGGGGTGTGGCTGCTCCTGCCCCAGTCCCTGGTTCCCCGCGGTGCTGGCGTCGGTGGTAAAGGTACTGGGTGGTGTTCATGAAGCTCTGGccacactgggaacagtggtGGAGGGGCTCGTTCAGGCCGTGCTTGTCCCTACGGTGGGCACTGAGCTCTGGCTCTTTACTGAAGCTGGCTCCACACTGGGCACACAggaaactctggaccaccttggGCACCTGAACCGGAGCACAGGTAGAGACAGTGGAAGTAGAGGAGGTTTCATTCTGGTTCTGCTCCTCAGTTCCATTGTTCTGGGAATCCGCCACCCCCGCTGTCTCCTCTTTAGACTCTTCCACCATCTCTTCCACCACCTCTTGCTGCAGTGTTACTATTTTGTAATCCTGGTAATCTGCATCCTGCATCTGTCCTCCCTGGGCCTGGGTTTGTATGACCCCCTCCTTGCCTTTCTCCTTGTGCTGCTTGCGGTGGTAGAGGAAGAGGGTGGTGTTGAGGAAGCTCTCCCCACACACGGTGCAGTGGTGCAGGGCTTCCTTGAGGCCATGCTGGGACTTGCGGTGGGTGACCAGCTCAGACACCATGCCGAAGCTGGAGCCACAGTCCACACACAGCAGGCTGGACGGGGGCTTGAGCTTCTTGGCTGCCTTTATCCTGTAGAAGTAGGATGTCTGCTCAGGGTTATCGGCTGGGAGGTCCTGGGAGGAAACGGGGGTGCGGGGTCTGGGGGGTCCTGGGAGGGAGCGGGGTCTGGGATGGACTGGCTGTCTGGTGCAGACTGGGCCTCTGTAGATGAATGAGCTGCCTGAGCCTGGATCTCAGAGGCTTTAGATCCAGTGGATTCCCCTACGCTCTCTGTTTCTGGCTCTTCCTCGCCTCCTTCCTGCCCTCTGTTGGTGGCGTTTGGCAGATACATGTGATCCAGGGTGGCTGATATGTCCTCTGCACTCAtcccatcctcctctttctctgctGACAGCTGAGACTTCACTACATCCTGCTCCTGCTGGGTTTGTTGTGCCCTCTCCTgactccttcctcttcctctgccccctcctcctTCTTGGTCATCCGTTGAGTTTGGTTCGTTTGGTTCATCTGGACCCAGGTCCACCTCCACTTCAGCCTGACTGtgcttcccctctccctctgggGCCAGTTCTGATCCAGATCCAGAGCCGGTCTCTTCTGGTCCTGGTTGGGTGGGTCCTGCCTTGGTCTGCAGACACTGACCATGTTTTCGGTGCTGCTGCCAGAGGATCAGGGAGTGGAACAGGGCGTCACAGTCTCCACACTGGTACAGGATCTTGGGCTGATCTCCTGAGGAAGGCTTATTTGGGCTAGCCATGGCCAGACCTGGTGCACCAGAGCTGGGCAGCACAGAGGAGACACTGGCCTTGGTCTGAGGGGCAGGAGATGGAGCAATGGGCTGGGTATATATCtg

Function

NR:

description
zinc finger protein 658B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257498 False 1525 lncRNA 0.59 2 12470510 12472088
TU257499 True 1533 lncRNA 0.59 2 12470510 12472088

Neighbor

gene id symbol gene type direction distance location
LOC110509802 LOC106576373 coding downstream 31728 12432169 ~ 12438782 (-)
trnav-uac NA coding downstream 340264 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 357645 12111383 ~ 12112865 (-)
LOC110509720 LOC106576492 coding downstream 381039 12087174 ~ 12089471 (-)
LOC110503589 LOC106576508 coding downstream 383562 12077084 ~ 12086948 (-)
LOC110503604 LOC106605712 coding upstream 198401 12670489 ~ 12673805 (-)
LOC110505096 tigit coding upstream 216391 12688479 ~ 12690874 (-)
LOC110509848 LOC106575652 coding upstream 219544 12691632 ~ 12700659 (-)
LOC110505108 LOC106578919 coding upstream 254976 12727064 ~ 12732403 (-)
LOC118944453 LOC106605569 coding upstream 263665 12735753 ~ 12745687 (-)
G225124 LOC106576258 non-coding downstream 39562 12428828 ~ 12430948 (-)
G225148 NA non-coding downstream 56099 12413593 ~ 12414411 (-)
G225088 LOC106576393 non-coding downstream 109717 12355815 ~ 12360793 (-)
G225096 erf non-coding downstream 142443 12325864 ~ 12328067 (-)
G225061 NA non-coding downstream 162242 12266375 ~ 12308268 (-)
G225177 NA non-coding upstream 6176 12478264 ~ 12480006 (-)
G225193 NA non-coding upstream 52577 12524665 ~ 12524898 (-)
G225194 NA non-coding upstream 53867 12525955 ~ 12526228 (-)
G225195 NA non-coding upstream 54309 12526397 ~ 12526741 (-)
G225196 NA non-coding upstream 56295 12528383 ~ 12528681 (-)
G225127 LOC106605865 other downstream 12719 12454388 ~ 12457791 (-)
G225099 NA other downstream 129544 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 389277 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 454409 12014926 ~ 12016101 (-)
LOC110509592 LOC100136300 other downstream 661164 11808113 ~ 11811663 (-)
G225171 LOC106605713 other upstream 211 12472299 ~ 12473060 (-)
G226124 NA other upstream 594785 13066873 ~ 13067357 (-)
G226187 NA other upstream 705090 13177178 ~ 13180272 (-)
G226224 NA other upstream 751796 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 871986 13344074 ~ 13344375 (-)

Expression


Co-expression Network