XLOC_021870 (hnrnpa1b)


Basic Information

Item Value
gene id XLOC_021870
gene name hnrnpa1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36306539 ~ 36310418 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043344
TGCGTGTCTCACCGACAAGCGTGTGGCGTAGCACGGACAGAAATAGTCGGTAGGATGTCCAAAGAGGGCCAGCCACGTGAGCCAGAGCAGCTGCGGAAGCTCTTCATTGGAGGGCTCAGCTTTGAGACCACAGACGATAGTTTAAGGGCACACTTTGAACAATGGGGCACCTTAACAGATTGTGTGGTGATGAAAGATCCAAACACAAAGCGCTCCAGGGGCTTTGGGTTTGTTACTTACTCCAGTGTGGATGAAGTCAATGCCTCTATGGATGCACGTCCTCACAAGGTCGATGGTAGACTTGTAGAGCCCAAACGAGCCGTGTCTAGAGAGGATTCCAGCAAACCATTTGCTCACACAACTGTGAAGAAGATTTTCGTGGGAGGCATCAAGGATGATACAGAGGAGAACCATCTACGCGACTACTTCGATCAGTTTGGAAAGATTGAGGTTGTTGAGATAATGGTTGACCACAAGACCGGAAATAAAAGAGGCTTTGCCTTCGTCACATTTGATGACCATGACTCTGTTGACCGTATCGTCATTCAAAAGTACCACACTGTGAATGGACACAACTGTGAAGTCCGAAAAGCTCTTTCAAAACAAGAAATGGCAAACACTGGtcgtggtggtggtggtggaggcGGCGGCGGTGGAGGAAACTTCAACCGATATGGCAATAATGGTGGCTACAATAATGACTTTGGAGGTGGCGGTGGAGGTGGCAACCGTGATGGATATTTTGGAAGAGGAGGAAGAGGAAATAACTTTGGAGGTGGTGGTGGCGGCGGTGGCTATGGAGGAGGCGGTGActgctacaacaacaacaatggaTTTGGAGGAGGTGGCTACGGCGGTGGTGGCGGCAATGGTGGTGGCAGTCCTGGCAACTATGGAGGCAACCGTGGATATGGAGGAGGCGGTGGAGGAGGACATGGTTATGGCAACCAGGGAGGAGGCTATGGTGGTGGCAACAGTGGTGGCGGTGGTGGTGGCTATAATAACTACAACAATGGCAATGGAAACTTTGGAGGTGGTAACTTtggaggtggtggtggtggtggcggCAACAGTGGAGGAGGTGGAAACTACAATGACTTCGGCAACTATAATAGCCAGCAGTCCAACTATGGTCCCATGAAAGGGAACTTTGGAGGCGGTGGAAGAAACAGTGGCCCATATGGTGGTGGCTATGGAGGTGGATCTAGTGGTAGTGGAGGAGGCGGCAGTGGTTATGGAGGTGGCTCTGGCGGTAGACGGTTTTAAGCTTAAAGGACTGAGTGCTTTAGGAGAGGAGAGCGAGAGAGGTGACAGGGCAGATGCAGGTTTACGTCCCTAGATCTGCTCAGCCAAACAGGTGTGGCAGATTTACAGCTGCCACCAGAAGAAGTGTACAGTAGCGCTATCGTGTGTGGGACATCATGAATTTGTCATCAtgcagatttattttatattgtcttTGGGGAAAAGCATTCCAATGAGGTTTTATGTAGAGTTCCtttcagttgtttttatttatgtaaccaATCAAGGTGAAATAAAaacatcattttgtttttttaaa
>TCONS_00043345
ACTACTTCGATCAGTTTGGAAAGATTGAGGTTGTTGAGATAATGGTTGACCACAAGACCGGAAATAAAAGAGGCTTTGCCTTCGTCACATTTGATGACCATGACTCTGTTGACCGTATCGTCATTCAAAAGTACCACACTGTGAATGGACACAACTGTGAAGTCCGAAAAGCTCTTTCAAAACAAGAAATGGCAAACACTGGtcgtggtggtggtggtggaggcGGCGGCGGTGGAGGAAACTTCAACCGATATGGCAATAATGGTGGCTACAATAATGACTTTGGAGGTGGCGGTGGAGGTGGCAACCGTGATGGATATTTTGGAAGAGGAGGAAGAGGAAATAACTTTGGAGGTGGTGGTGGCGGCGGTGGCTATGGAGGAGGCGGTGActgctacaacaacaacaatggaTTTGGAGGAGGTGGCTACGGCGGTGGTGGCGGCAATGGTGGTGGCAGTCCTGGCAACTATGGAGGCAACCGTGGATATGGAGGAGGCGGTGGAGGAGGACATGGTTATGGCAACCAGGGAGGAGGCTATGGTGGTGGCAACAGTGGTGGCGGTGGTGGTGGCTATAATAACTACAACAATGGCAATGGAAACTTTGGAGGTGGTAACTTtggaggtggtggtggtggtggcggCAACAGTGGAGGAGGTGGAAACTACAATGACTTCGGCAACTATAATAGCCAGCAGTCCAACTATGGTCCCATGAAAGGGAACTTTGGAGGCGGTGGAAGAAACAGTGGCCCATATGGTGGTGGCTATGGAGGTGGATCTAGTGGTAGTGGAGGAGGCGGCAGTGGTTATGGAGGTGGCTCTGGCGGTAGACGGTTTTAAGCTTAAAGGTTTGGATGATTGGAAAAAAATCACCGTCTCGAAATGAAGGCATTTTTATCTAAAATGGCAAAGTGATAAGGACCAAGATGCTGCTGAAGagactttatttttattacctgttttttaccttttttacaaataaaatttttaatgctACAAA
>TCONS_00043346
GCGGCAATGGTGGTGGCAGTCCTGGCAACTATGGAGGCAACCGTGGATATGGAGGAGGCGGTGGAGGAGGACATGGTTATGGCAACCAGGGAGGAGGCTATGGTGGTGGCAACAGTGGTGGCGGTGGTGGTGGCTATAATAACTACAACAATGGCAATGGAAACTTTGGAGGTGGTAACTTtggaggtggtggtggtggtggcggCAACAGTGGAGGAGGTGGAAACTACAATGACTTCGGCAACTATAATAGCCAGCAGTCCAACTATGGTCCCATGAAAGGGAACTTTGGAGGCGGTGGAAGAAACAGTGGCCCATATGGTGGTTTGGATGATTGGAAAAAAATCACCGTCTCGAAATGAAGGCATTTTTATCTAAAATGGCAAAGTGATAAGGACCAAGATGCTGCTGAAGagactttatttttattacctgttttttaccttttttacaaataaaatttttaatgctAC
>TCONS_00043347
CAGTGGAGGAGGTGGAAACTACAATGACTTCGGCAACTATAATAGCCAGCAGTCCAACTATGGTCCCATGAAAGGGAACTTTGGAGGCGGTGGAAGAAACAGTGGCCCATATGGTGGTGGCTATGGAGGTGGATCTAGTGGTAGTGGAGGAGGCGGCAGTGGTTATGGAGGTGGCTCTGGCGGTAGACGGTTTTAAGCTTAAAGGTTTGTTTTAGATTTTGCTGTCTACCATGCATATAGACTTATAACAGGGGTAACGATCCCAATAAGTTAGTCTTGGACTAAATACTCTAAACTGTAACCTTGCTGTACATCTGGTGTAGAAACAACCCTCAGGTAGTGTGCAGCTTAACATTTGTTGTTCATATTGTTCAACAGGACTGAGTGCTTTAGGAGAGGAGAGCGAGAGAGGTGACAGGGCAGATGCAGGTTTACGTCCCTAGATCTGCTCAGCCAAACAGGTGTGGCAGATTTACAGCTGCCACCAGAAGAAGTGTACAGTAGCGCTATCGTGTGTGGGACATCATGAATTTGTCATCAtgcagatttattttatattgtcttTGGGGAAAAGCATTCCAATGAGGTTTTATGTAGAGTTCCtttcagttgtttttatt

Function

symbol description
hnrnpa1b Predicted to enable RNA binding activity. Predicted to be located in cytoplasm; nucleus; and viral nucleocapsid. Is expressed in brain; gut; retina; and trunk. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 20; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3; and tropical spastic paraparesis. Orthologous to human HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1).

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030912-14 Predicted to enable RNA binding activity. Predicted to be located in cytoplasm; nucleus; and viral nucleocapsid. Is expressed in brain; gut; retina; and trunk. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 20; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3; and tropical spastic paraparesis. Orthologous to human HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1).

Ensembl:

ensembl_id ENSDARG00000036675

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043344 False 1564 mRNA 0.49 11 36306539 36309617
TCONS_00043345 False 1005 nonsense_mediated_decay 0.48 9 36307661 36310418
TCONS_00043346 False 473 mRNA 0.47 4 36308428 36310415
TCONS_00043347 True 620 mRNA 0.45 2 36308717 36309569

Neighbor

gene id symbol gene type direction distance location
XLOC_021869 hoxc1a coding upstream 115551 36178104 ~ 36190988 (+)
XLOC_021868 BX005254.2 coding upstream 152128 36150430 ~ 36154411 (+)
XLOC_021867 hoxc4a coding upstream 173976 36130883 ~ 36132563 (+)
XLOC_021866 dre-mir-10b-2 coding upstream 176447 36130001 ~ 36130092 (+)
XLOC_021865 hoxc5a coding upstream 186028 36118738 ~ 36120511 (+)
XLOC_021871 NA coding downstream 6931 36317349 ~ 36317913 (+)
XLOC_021872 NA coding downstream 8760 36319178 ~ 36319588 (+)
XLOC_021873 copz1 coding downstream 30102 36340520 ~ 36354106 (+)
XLOC_021874 NA coding downstream 54487 36364905 ~ 36365917 (+)
XLOC_021875 NA coding downstream 107701 36418119 ~ 36420278 (+)
XLOC_021861 mir196a-1 non-coding upstream 218343 36088091 ~ 36088196 (+)
XLOC_021854 BX465853.1 non-coding upstream 508260 35790808 ~ 35798279 (+)
XLOC_021852 NA non-coding upstream 576477 35729255 ~ 35730062 (+)
XLOC_021876 NA non-coding downstream 147929 36458347 ~ 36488629 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location