G225280 (grik5)


Basic Information

Item Value
gene id G225280
gene name grik5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12658663 ~ 12658884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257631
ccaGTGGCATGCCGATGCCGTAGCCCTTGGTGTCCAGCAGACCACCAATCTGGGTGAGGTTACAGTTGAGTTTGCGGTAATACTCATTCATGGTGCTCTCCAGGAGGAAGGCATATTTAGAGTTGACCACGCGGGCAATGCCCTCCTCCGTGCTTTTCACAAACACACTGGGCTGCTTGGAGTGCATGTAGTTCCACATGCGCTGGTATGTCTGGTAGCGCG

Function

symbol description
grik5 Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Is expressed in brain; eye; retinal inner plexiform layer; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human GRIK5 (glutamate ionotropic receptor kainate type subunit 5).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257631 True 222 lncRNA 0.43 1 12658663 12658884

Neighbor

gene id symbol gene type direction distance location
LOC110509802 LOC106576373 coding downstream 219881 12432169 ~ 12438782 (-)
trnav-uac NA coding downstream 528417 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 545798 12111383 ~ 12112865 (-)
LOC110509720 LOC106576492 coding downstream 569192 12087174 ~ 12089471 (-)
LOC110503589 LOC106576508 coding downstream 571715 12077084 ~ 12086948 (-)
LOC110503604 LOC106605712 coding upstream 11605 12670489 ~ 12673805 (-)
LOC110505096 tigit coding upstream 29595 12688479 ~ 12690874 (-)
LOC110509848 LOC106575652 coding upstream 32748 12691632 ~ 12700659 (-)
LOC110505108 LOC106578919 coding upstream 68180 12727064 ~ 12732403 (-)
LOC118944453 LOC106605569 coding upstream 76869 12735753 ~ 12745687 (-)
G225279 NA non-coding downstream 849 12657159 ~ 12657814 (-)
G225278 LOC102205406 non-coding downstream 1716 12656131 ~ 12656947 (-)
G225277 NA non-coding downstream 3599 12654838 ~ 12655064 (-)
G225276 NA non-coding downstream 8386 12649889 ~ 12650277 (-)
G225275 NA non-coding downstream 9077 12648868 ~ 12649586 (-)
G225281 NA non-coding upstream 320 12659204 ~ 12659547 (-)
G225282 NA non-coding upstream 812 12659696 ~ 12660671 (-)
G225283 NA non-coding upstream 1921 12660805 ~ 12661045 (-)
G225267 grik5 non-coding upstream 3091 12661975 ~ 12662187 (-)
G225266 NA non-coding upstream 3599 12662483 ~ 12664579 (-)
G225171 LOC106605713 other downstream 185603 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 200872 12454388 ~ 12457791 (-)
G225099 NA other downstream 317697 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 577430 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 642562 12014926 ~ 12016101 (-)
G226124 NA other upstream 407989 13066873 ~ 13067357 (-)
G226187 NA other upstream 518294 13177178 ~ 13180272 (-)
G226224 NA other upstream 565000 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 685190 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1267790 13909746 ~ 13927861 (-)

Expression


Co-expression Network