G225345 (LOC106578696)



Basic Information


Item Value
gene id G225345
gene name LOC106578696
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12779923 ~ 12781221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU257730
ACAGAGACAGCTATCTCTTACCACACTCATTTGGGAGTTTATTTTACAAGGTCATCTCGACAACAACaaagataataataatacagtaggtgttgcaaaaaataaaatattacatAGATAACATCAATATGTACGTTTTGTTATTTTCTCATCGTTACCCACTGCATGTGGATGATAAACATAATTCACTGGAAACTTCCAATGACTCAACTATCATTATCCCACAACAGAGGAAACATTCTTATTCCCTTATATTCTTACTCTGAGAAAcaagcattcttattggacaGGATTAAGAGTTTCAAAACGTTGGTTCCTGTTTTATTATTCGTTCTGAAGGTGAACCTGAACTCATTCAATGTTCTCCTCTGTCCTTCCCATCGTCTGTAGCCTTATAGCGCCCCTCCTAGGGATCAAGGAGGAACAGCAGTCCCATACAGAGGACCAGTCCTAAAACTCCAGTCAGCCTCACTGTTTCAGATCCTGATACTGTGGTGACTACCTGTGACCTTCACTGTCTTGGAGGCCTCTGCAGAGCGTCCAGCTGCTGTGTTCTCCACCACACAGGTGAAGTTCTGTACCGTACCAGGTACCGACGGGATCCATTTCAGGATATTCTTCCTCACAGAGAGGTAGGCGCTAGTAAGGATACCCCCCCTCAATGGCCAGCGGATGGAGCAGTCCAGGTCGACAGTGCAGTTCACCTGGCAGGTAAAGGTGTATTCCCTCCCAGGCAACACTGTGTCAGGGCCACTGATACTAACA
>TU257731
ACAGAGACAGCTATCTCTTACCACACTCATTTGGGAGTTTATTTTACAAGGTCATCTCGACAACAACaaagataataataatacagtaggtgttgcaaaaaataaaatattacatAGATAACATCAATATGTACGTTTTGTTATTTTCTCATCGTTACCCACTGCATGTGGATGATAAACATAATTCACTGGAAACTTCCAATGACTCAACTATCATTATCCCACAACAGAGGAAACATTCTTATTCCCTTATATTCTTACTCTGAGAAAcaagcattcttattggacaGGATTAAGAGTTTCAAAACGTTGGTTCCTGTTTTATTATTCGTTCTGAAGGTGAACCTGAACTCATTCAATGTTCTCCTCTGTCCTTCCCATCGTCTGTAGCCTTATAGCGCCCCTCCTAGGGATCAAGGAGGAACAGCAGTCCCATACAGAGGACCAGTCCTAAAACTCCAGTCAGCCTCACTGTTTCAGATCCTGATACTGTGGGTCCTGTGACCTTCACTGTCTTGGAGGCCTCTGCAGAGCGTCCAGCTGCTGTGTTCTCCACCACACAGGTGAAGTTCTGTACCGTACCAGGTACCGACGGGATCCATTTCAGGATATTCTTCCTCACAGAGAGGTAGGCGCTAGTAAGGATACCCCCCCTCAATGGCCAGCGGATGGAGCAGTCCAGGTCGACAGTGCAGTTCACCTGGCAGGTAAAGGTGTATTCCCTCCCAGGCAACACTGTGTCAGGGCCACTGATACTAACA

Function


NR:

description
uncharacterized protein LOC110509875

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU257730 False 765 lncRNA 0.44 2 12779923 12781221
TU257731 True 761 lncRNA 0.44 2 12779923 12781221
Loading

Neighbor


gene id symbol gene type direction distance location
LOC110509869 NA coding downstream 15942 12761519 ~ 12763981 (-)
LOC110509853 NA coding downstream 21743 12753798 ~ 12758180 (-)
LOC118944488 NA coding downstream 26137 12752682 ~ 12753786 (-)
LOC118944453 LOC106605569 coding downstream 34236 12735753 ~ 12745687 (-)
LOC110505108 LOC106578919 coding downstream 47520 12727064 ~ 12732403 (-)
LOC110509927 LOC106578751 coding upstream 75473 12856694 ~ 12860589 (-)
tlr21 LOC106605556 coding upstream 83721 12864942 ~ 12875688 (-)
LOC110503616 LOC106605556 coding upstream 99664 12880885 ~ 12883016 (-)
cxcr3.1 cxcr3b coding upstream 144233 12925454 ~ 12929064 (-)
LOC110510146 mrpl17 coding upstream 557972 13339193 ~ 13341845 (-)
G225292 NA non-coding downstream 106333 12673056 ~ 12673590 (-)
G225290 NA non-coding downstream 110667 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 112353 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 113614 12666103 ~ 12666309 (-)
G225266 NA non-coding downstream 115344 12662483 ~ 12664579 (-)
G225369 LOC106578676 non-coding upstream 32778 12813999 ~ 12820135 (-)
G225368 NA non-coding upstream 33202 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding upstream 33716 12814937 ~ 12821075 (-)
G225370 NA non-coding upstream 60090 12841311 ~ 12843899 (-)
G225391 NA non-coding upstream 66215 12847436 ~ 12847695 (-)
G225171 LOC106605713 other downstream 306863 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 322132 12454388 ~ 12457791 (-)
G225099 NA other downstream 438957 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 698690 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 763822 12014926 ~ 12016101 (-)
G226124 NA other upstream 285652 13066873 ~ 13067357 (-)
G226187 NA other upstream 395957 13177178 ~ 13180272 (-)
G226224 NA other upstream 442663 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 562853 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1145453 13909746 ~ 13927861 (-)

Expression


G225345(LOC106578696) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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G225345(LOC106578696) Expression in each Bioproject

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G225345(LOC106578696) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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Co-expression Network