G225369 (LOC106578676)


Basic Information

Item Value
gene id G225369
gene name LOC106578676
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12813999 ~ 12820135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257782
AGTTGACGATCAGTCTGTATTCTGTGCTGGTCATGTTGCTGAGGGGGTTGTAGGCAGAACACTGATAGCCTCCGTTGTCAGAATCCTGGACAGAGTTGAAGGTAAGTGTATTGTTGTTCATAGAGAAGTCTGTTCTGTTATCAGCATACAGAGGCCAGCCGTTCTTCATCCAGTGAATGGAGTAAATGGTTCCAGTGGTCTCACACGTCAGAGAAAACATGTTGTCTGCTATTGGTTGGGCACCCATGACTTTCACCATGGCCATGGAGACTGGTTC
>TU257783
ATTTAGAATGACATTTGCCGATACGTTTGGTTTTGGGCAATAATAACTACTCACAGTTGACGATCAGTCTGTATTCTGTGCTGGTCATGTTGCTGAGGGGGTTGTAGGCAGAACACTGATAGCCTCCGTTGTCAGAATCCTGGACAGAGTTGAAGGTAAGTGTATTGTTGTTCATAGAGAAGTCTGTTCTGTTATCAGCATACAGAGGCCAGCCGTTCTTCATCCAGTGAATGGAGTAAATGGTTCCAGTGGTCTCACACGTCAGAGTAAACATGTTGTCTGCTATTGGTTGGGCACCCATGACTTTCACCATGGCCATGGAGACTGGTT
>TU257785
ATTTAGAATGACATTTGCCGATACGTTTGGTTTTGGGCAATAATAACTACTCACAGTTGACGATCAGTCTGTATTCTGTGCTGGTCATGTTGCTGAGGGGGTTGTAGGCAGAACACTGATAGCCTCCGTTGTCAGAATCCTGGACAGAGTTGAAGGTAAGTGTATTGTTGTTCATAGAGAAGTCTGTTCTGTTATCAGCATACAGAGGCCAGCCGTTCTTCATCCAGTGAATGGAGTAAATGGTTCCAGTGGTCTCACACGTCAGAGTAAACATGTTGTCTGCTATTGGTTGGGCACCCATGACTTTCACCATGGCCATGGAGACTGGTTCT

Function

NR:

description
hemicentin-1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257782 False 277 lncRNA 0.47 2 12813999 12817178
TU257783 False 330 lncRNA 0.45 2 12816018 12820135
TU257785 True 332 lncRNA 0.45 2 12818919 12820135

Neighbor

gene id symbol gene type direction distance location
LOC110509869 NA coding downstream 50018 12761519 ~ 12763981 (-)
LOC110509853 NA coding downstream 55819 12753798 ~ 12758180 (-)
LOC118944488 NA coding downstream 60213 12752682 ~ 12753786 (-)
LOC118944453 LOC106605569 coding downstream 68312 12735753 ~ 12745687 (-)
LOC110505108 LOC106578919 coding downstream 81596 12727064 ~ 12732403 (-)
LOC110509927 LOC106578751 coding upstream 36559 12856694 ~ 12860589 (-)
tlr21 LOC106605556 coding upstream 44807 12864942 ~ 12875688 (-)
LOC110503616 LOC106605556 coding upstream 60750 12880885 ~ 12883016 (-)
cxcr3.1 cxcr3b coding upstream 105319 12925454 ~ 12929064 (-)
LOC110510146 mrpl17 coding upstream 519058 13339193 ~ 13341845 (-)
G225345 LOC106578696 non-coding downstream 32778 12779923 ~ 12781221 (-)
G225292 NA non-coding downstream 140409 12673056 ~ 12673590 (-)
G225290 NA non-coding downstream 144743 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 146429 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 147690 12666103 ~ 12666309 (-)
G225370 NA non-coding upstream 21176 12841311 ~ 12843899 (-)
G225391 NA non-coding upstream 27301 12847436 ~ 12847695 (-)
G226019 NA non-coding upstream 91335 12911470 ~ 12912132 (-)
G226055 NA non-coding upstream 137308 12957443 ~ 12957679 (-)
G226067 NA non-coding upstream 150966 12971101 ~ 12971823 (-)
G225171 LOC106605713 other downstream 340939 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 356208 12454388 ~ 12457791 (-)
G225099 NA other downstream 473033 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 732766 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 797898 12014926 ~ 12016101 (-)
G226124 NA other upstream 246738 13066873 ~ 13067357 (-)
G226187 NA other upstream 357043 13177178 ~ 13180272 (-)
G226224 NA other upstream 403749 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 523939 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1106539 13909746 ~ 13927861 (-)

Expression


Co-expression Network