G225368


Basic Information

Item Value
gene id G225368
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12814423 ~ 12823129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257767
CAATGACAATGAGCATCTTGGAGACAGTGCTGTTTCTGCCAGTGACGTTGTTGAAGGCCACACAGGTGTACTCCCCATGACTGGCTAAGGTCAGTGGGTCAGTCTCATACACTGAGCCAGTCTCCACCTGGGAGCCATTGAAGAACCAGCTAAACTGGCTGGGAGGCTgagaggaggcagagcagttgaagGTCACGATGTATCCTGTCATCGCTATGTCCGGACTCATGATAACAGGTCTCTCTGGACCATCTGGGAAACACAAGACAATGAAGATATTGAATGACATTAGCTATTGGAACTGCCATTAGTGCATTTACCGTGGTTTGACCCCTGCAATACCCAACCATC
>TU257758
CAATGATGGTGAGCATCTTGGAGGCAGTGCTGTTTCTGTCAGTGATGTTGTTGAAAGCCACACAGGTGTACTCCCCATGACTGGCTAAGGTCAGTGGGTCAGTCTCATACACTGAGCCAGTCACCACCTGGGAGCCattgaagaaccagctgaactggctgggaggctgagaggaggcagagcagttgaagGTCACGATGTATCCTGTCATCACTATGTCCGGACTCATGATAACAGGTCTCTCTGGACCAT
>TU257759
CAATGACAATGAGCATCTTGGAGACAGTGCTGTTTCTGCCAGTGACGTTGTTGAAGGCCACACAGGTGTACTCCCCATGACTGGCTAAGGTCAGTGGGCCAGTCTCATACACTGAGCCAGTCTCCACCTGGGAGCCATTGAAGAACCAGCTAAACTGGCTCGGAGGCTgagaggaggcagagcagttgaagGTCACGATGTATCCTGTCATCACTATGTCCGGACTCATGATAACAGGTCTCTCTGGACCAT
>TU257764
TTACTAGATTGTAAATTAACACAACAGAGCAAAGAATCTGAGGTCTGACTTACCAATGATGGTGAGCATCTTGGAGACAGTGCTGTTTCTGACAGTGAGGTTGTTGAAGGCCACACAGGTGTACTCCCCATGACTGGCTAAGGTCAGTGGGTCAGTCTCATACACTGAGCCAGTCTCCACCTGGGAGCCATTGAAGAACCAGCTAAACTGGCTGGGAGGCTgagaggaggcagagcagttgaagGTCACGATGTATCCTGTCATCACTATGTCCGGACTCATGATAACAGGTCTCTCTGGACCAT
>TU257778
CAATGATGGTGAGCATCTTGGAGGCAGTGCTGTTTCTGTCAGTGATGTTGTTGAAAGCCACACAGGTGTACTCCCCATGACTGGCTAAGGTCAGTGGGTCAGTCTCATACACTGAGCCAGTCTCCACCTGGGAGCCATTGAAGAACCAGCTAAACTGGCTGGGAGGCTgagaggaggcagagcagttgaagGTCACGATGTATCCTGTCATCACTATGTCCGGACTCATGATAACAGGTCTCTCTGGACCAT
>TU257760
CAATGATGGTGAGCATCTTGGAGGCAGTGCTGTTTCTGTCAGTGATGTTGTTGAAAGCCACACAGGTGTACTCCCCATGACTGGCTAAGGTCAGTGGGTCAGTCTCATACACTGAGCCAGTCTCCACCTGGGAGCCattgaagaaccagctgaactggctgggaggctgagaggaggcagagcagttgaagGTCACGATGTATCCTGTCATCGCTATGTCCGGACTCATGATAACAGGTCTCTCTGGACCAT
>TU257755
CTTACCAACAACAGTGAGAATCTTGGAGACAGTTCTGTTTCTGCCAGTGACGTTGTTGAAGGCCACACAGGTGTACTCCCCATGACTGGCTAAGGTCAGTGGGCCAGTCTCATACACTGAGCCAGTCACCACCTGGGAGCCattgaagaaccagctgaactggctgggaggctgagaggaggcagagcagttgaagGTCACGTTGTGTCCTGTTTCTCCTAATGCTGGTCCTGTTATAACAGGCATCTCTGGTCCATCTATAATACAAAAGACAAGCAGCTAGTCCCAACATCTGACTGTCACTCAATAGAGGTTATT
>TU257765
TTACTAGATTGTAAATTAACACAACAGAGCAAAGAATCTGAGGTCTGACTTACCAATGATGGTGAGCATCTTGGAGACAGTGCTGTTTCTGACAGTGAGGTTGTTGAAGGCCACACAGGTGTACTCCCCATGACTGGCTAAGGTCAGTGGGTCAGTCTCATACACTGAGCCAGTCTCCACCTGGGAGCCATTGAAGAACCAGCTAAACTGGCTGGGAGGCTgagaggaggcagagcagttgaagGTCACGATGTATCCTGTCATCACTATGTCCGGACTCATGATAACAGGTCTCTCTGGACCAT
>TU257772
CTTACCAACAACAGTGAGAATCTTGGAGACAGTTCTGTTTCTGCCAGTGACGTTGTTGAAGGCCACACAGGTGTACTCCCCATGACTGGCTAAGGTCAGTGGGCCAGTCTCATACACTGAGCCAGTCTCCACCTGGGAGCCATTGAAGAACCAGCTAAACTGGCTCGGAGGCTgagaggaggcagagcagttgaagGTCACGATGTATCCTGTCATCACTATGTCCGGACTCATGATAACAGGTCTCTCTGGACCAT
>TU257757
TTACTAGATTGTAAATTAACACAACAGAGCAAAGAATCTGAGGTCTGACTTACCAATGATGGTGAGCATCTTGGAGACAGTGCTGTTTCTGACAGTGAGGTTGTTGAAGGCCACACAGGTGTACTCCCCATGACTGGCTAAGGTCAGTGGGTCAGTCTCATACACTGAGCCAGTCTCCACCTGGGAGCCATTGAAGAACCAGCTAAACTGGCTGGGAGGCTgagaggaggcagagcagttgaagGTCACGATGTATCCTGTCATCACTATGTCCGGACTCATGATAACAGGTCTCTCTGGACCAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU257767 False 351 lncRNA 0.39 2 12814423 12815904
TU257758 False 252 lncRNA 0.41 3 12816540 12820579
TU257759 False 252 lncRNA 0.52 2 12816540 12818807
TU257764 False 305 lncRNA 0.44 2 12816540 12823129
TU257778 False 252 lncRNA 0.52 3 12816540 12820579
TU257760 False 252 lncRNA 0.54 2 12817425 12820579
TU257755 False 318 lncRNA 0.49 2 12818495 12822197
TU257765 False 305 lncRNA 0.35 2 12819443 12823129
TU257772 False 257 lncRNA 0.52 2 12819443 12822197
TU257757 True 305 lncRNA 0.49 2 12820328 12823129

Neighbor

gene id symbol gene type direction distance location
LOC110509869 NA coding downstream 50442 12761519 ~ 12763981 (-)
LOC110509853 NA coding downstream 56243 12753798 ~ 12758180 (-)
LOC118944488 NA coding downstream 60637 12752682 ~ 12753786 (-)
LOC118944453 LOC106605569 coding downstream 68736 12735753 ~ 12745687 (-)
LOC110505108 LOC106578919 coding downstream 82020 12727064 ~ 12732403 (-)
LOC110509927 LOC106578751 coding upstream 33565 12856694 ~ 12860589 (-)
tlr21 LOC106605556 coding upstream 41813 12864942 ~ 12875688 (-)
LOC110503616 LOC106605556 coding upstream 57756 12880885 ~ 12883016 (-)
cxcr3.1 cxcr3b coding upstream 102325 12925454 ~ 12929064 (-)
LOC110510146 mrpl17 coding upstream 516064 13339193 ~ 13341845 (-)
G225345 LOC106578696 non-coding downstream 33202 12779923 ~ 12781221 (-)
G225292 NA non-coding downstream 140833 12673056 ~ 12673590 (-)
G225290 NA non-coding downstream 145167 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 146853 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 148114 12666103 ~ 12666309 (-)
G225370 NA non-coding upstream 18182 12841311 ~ 12843899 (-)
G225391 NA non-coding upstream 24307 12847436 ~ 12847695 (-)
G226019 NA non-coding upstream 88341 12911470 ~ 12912132 (-)
G226055 NA non-coding upstream 134314 12957443 ~ 12957679 (-)
G226067 NA non-coding upstream 147972 12971101 ~ 12971823 (-)
G225171 LOC106605713 other downstream 341363 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 356632 12454388 ~ 12457791 (-)
G225099 NA other downstream 473457 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 733190 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 798322 12014926 ~ 12016101 (-)
G226124 NA other upstream 243744 13066873 ~ 13067357 (-)
G226187 NA other upstream 354049 13177178 ~ 13180272 (-)
G226224 NA other upstream 400755 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 520945 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1103545 13909746 ~ 13927861 (-)

Expression


Co-expression Network