G225371 (LOC106578676)


Basic Information

Item Value
gene id G225371
gene name LOC106578676
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12814937 ~ 12821075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257790
cgcagaacccttttggaacccttttttctatgaGTGTACTCACAGTTGACGATCAGTCTGTAGTTTGAGCTGGTCATGTTGCTGAGGGGGTTGGAAGCAGAACATTGATAGTCTCCGATGTCAGAATCCTGGACATAGTTGAAGGTCAGTGTATTGTTGTTCATAGAGAAGTCTGTTCTGTTGTCAGCATACAGAGGCCAGCCGTTCCTCATCCACTGAATGGAGTAAACCGTTCCAGCGGTCTCACAGGTCAGAGAGAATCTCTCGTTCAGTATTGGCTGGGCTCCAATGACTTTCACCGTGGTCATGGTCACAGGTGC
>TU257791
atcctatggggacagccgcagaacccttttggaacccttttttctatgaGTGTACTCACAGTTGACAATCAGTCTGTAGTTTGAGCTGGTCATGTTGCTGAGGGGGTTGGAAGCAGAACATTGATAGTCTCCGATGTCAGAATCCTGGACATAGTTGAAGGTCAGTGTATTGTTGTTCATAGAGAAGTCTGTTCTGTTGTCAGCATACAGAGGCCAGCCGTTCCTCATCCACTGAATGGAGTAAACCGTTCCAGCGGTCTCACAGGTCAGAGAGAATCTCTCGTTCAGTATTGGCTGGGCTCCAATGACTTTCACCGTGGTCATGGTCACAGGTGC
>TU257793
atcctatggggacagccgcagaacccttttggaacccttttttctatgaGTGTACTCACAGTTGACAATCAGTCTGTAGTTTGAGCTGGTCATGTTGCTGAGGGGGTTGGAAGCAGAACATTGATAGTCTCCGATGTCAGAATCCTGGACATAGTTGAAGGTCAGTGTATTGTTCATAGAGAAGTCTGTTCTGTTGTCAGCATACAGAGGCCAGCCGTTCCTCATCCACTGAATGGAGTAAACCGTTCCAGCGGTCTCACAGGTCAGAGAGAATCTCTCGTTCAGTATTGGCTGGGCTCCAATGACTTTCACCGTGGTCATGGTCACAGGTGC

Function

NR:

description
hemicentin-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257790 False 320 lncRNA 0.48 2 12814937 12818159
TU257791 False 336 lncRNA 0.39 2 12814937 12821075
TU257793 True 333 lncRNA 0.48 2 12814937 12821075

Neighbor

gene id symbol gene type direction distance location
LOC110509869 NA coding downstream 50956 12761519 ~ 12763981 (-)
LOC110509853 NA coding downstream 56757 12753798 ~ 12758180 (-)
LOC118944488 NA coding downstream 61151 12752682 ~ 12753786 (-)
LOC118944453 LOC106605569 coding downstream 69250 12735753 ~ 12745687 (-)
LOC110505108 LOC106578919 coding downstream 82534 12727064 ~ 12732403 (-)
LOC110509927 LOC106578751 coding upstream 35619 12856694 ~ 12860589 (-)
tlr21 LOC106605556 coding upstream 43867 12864942 ~ 12875688 (-)
LOC110503616 LOC106605556 coding upstream 59810 12880885 ~ 12883016 (-)
cxcr3.1 cxcr3b coding upstream 104379 12925454 ~ 12929064 (-)
LOC110510146 mrpl17 coding upstream 518118 13339193 ~ 13341845 (-)
G225345 LOC106578696 non-coding downstream 33716 12779923 ~ 12781221 (-)
G225292 NA non-coding downstream 141347 12673056 ~ 12673590 (-)
G225290 NA non-coding downstream 145681 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 147367 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 148628 12666103 ~ 12666309 (-)
G225370 NA non-coding upstream 20236 12841311 ~ 12843899 (-)
G225391 NA non-coding upstream 26361 12847436 ~ 12847695 (-)
G226019 NA non-coding upstream 90395 12911470 ~ 12912132 (-)
G226055 NA non-coding upstream 136368 12957443 ~ 12957679 (-)
G226067 NA non-coding upstream 150026 12971101 ~ 12971823 (-)
G225171 LOC106605713 other downstream 341877 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 357146 12454388 ~ 12457791 (-)
G225099 NA other downstream 473971 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 733704 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 798836 12014926 ~ 12016101 (-)
G226124 NA other upstream 245798 13066873 ~ 13067357 (-)
G226187 NA other upstream 356103 13177178 ~ 13180272 (-)
G226224 NA other upstream 402809 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 522999 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1105599 13909746 ~ 13927861 (-)

Expression


Co-expression Network