G224628


Basic Information

Item Value
gene id G224628
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12873787 ~ 12875681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU256827
GATTATTattatcggctttttttggtcctccaataatcggtatcggtattggcgttgaaaaatcataatcggtcaacctctaattacAATTAACAAACATATACCTTATTtaggtaagtattcagaccatttgctatgagactttgaattgagctcaggtgcatcctgtttccattgatcatccttgagatgtttctacaacttgattggagtccacctgtgataaattctattgattggacatgatttggaaaggcctgtctatataCTGTCTCTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256827 True 278 lncRNA 0.35 2 12873787 12875681

Neighbor

gene id symbol gene type direction distance location
si:dkey-250k15.4 LOC106605557 coding upstream 7228 12860738 ~ 12866559 (+)
LOC110503610 LOC106578751 coding upstream 33572 12838052 ~ 12840215 (+)
LOC110509883 LOC106605563 coding upstream 48301 12808928 ~ 12825486 (+)
LOC110509875 LOC106578696 coding upstream 92579 12777268 ~ 12781208 (+)
grik5 grik5 coding upstream 209045 12497538 ~ 12664742 (+)
cxcr3.2 cxcr3a coding downstream 32446 12908127 ~ 12912178 (+)
LOC110509966 NA coding downstream 45733 12921414 ~ 12924048 (+)
LOC110509972 LOC106596703 coding downstream 96388 12972069 ~ 12977823 (+)
LOC110509979 LOC106574911 coding downstream 109555 12985236 ~ 13022032 (+)
LOC110503622 LOC106592383 coding downstream 149644 13025325 ~ 13026634 (+)
G224653 NA non-coding upstream 34099 12839256 ~ 12839688 (+)
G224634 NA non-coding upstream 77008 12796537 ~ 12796779 (+)
G224610 NA non-coding upstream 110261 12762810 ~ 12763526 (+)
G224604 LOC106578911 non-coding upstream 118322 12752662 ~ 12755465 (+)
G224560 NA non-coding upstream 178647 12694646 ~ 12695140 (+)
G224656 NA non-coding downstream 1215 12876896 ~ 12877124 (+)
G224629 NA non-coding downstream 3780 12879461 ~ 12879696 (+)
G225398 NA non-coding downstream 4947 12880628 ~ 12880846 (+)
G225429 cxcr3b non-coding downstream 49780 12925461 ~ 12926687 (+)
G225439 NA non-coding downstream 67287 12942968 ~ 12943439 (+)
LOC110503596 LOC106576258 other upstream 491963 12368841 ~ 12430981 (+)
LOC110509826 LOC106576393 other upstream 519468 12259134 ~ 12357204 (+)
G224297 NA other upstream 851343 12020965 ~ 12022444 (+)
LOC110537447 LOC106577011 other upstream 858982 12005269 ~ 12053650 (+)
G225451 NA other downstream 90351 12966032 ~ 12966533 (+)
LOC110510042 LOC106578847 other downstream 171819 13047440 ~ 13074579 (+)
G225649 NA other downstream 615890 13491571 ~ 13491980 (+)

Expression


Co-expression Network