XLOC_021875


Basic Information

Item Value
gene id XLOC_021875
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36418119 ~ 36420278 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044874
CTTCCGGTGTGAACAAACTCTACGACcttttgatttgatttcattGTCGTGTAAAAGGTCGAGCTGCTTACGACATTTGACGTTTATTTCATATTTGGGAAGATGtgggtagcgctgtcgccttatAGCAaagaggttgctggttcgagcctcggctgggtcagttggcgtttctgtgtggaatttgcatgttcttcccgtgttggcgtgggtttcctccgggtgctccagtttcccccacagtccaaagacatgtgctgtagatgaattggCAACACGTGTTTTCCTGAGGAAGAAATAAGAGAATGTCTCCATTTCAAGcggatgaccttccagctgcaaccaatcactgcgAAATCTGGACAATGTTGTGAAGttttccattgctgttgcttgtggtGTAAAAACACTTGTTGGATTTATCTAAGATTCTTCAATAAACTGCTCTTTATCATCATGACCTTGTCTCCTACTTCTGCTCCTCTCTAGCTTTCTCAGTCAACTCCTATAATGATAGATTATTAATTCAGTTAAATACTGGTTAACAGATTTGGGTATTGGAAACTCTGCTAACGTGTCCA
>TCONS_00043349
CTACGACcttttgatttgatttcattGTCGTGTAAAAGGTCGAGCTGCTTACGACATTTGACGTTTATTTCATATTTGGGAAGATGCAaagaggttgctggttcgagcctcggctgggtcagttggcgtttctgtgtggaatttgcatgttcttcccgtgttggcgtgggtttcctccgggtgctccagtttcccccacagtccaaagacatgtgctgtagatgaattggCAACACGTGTTTTCCTGAGGAAGAAATAAGAGAATGTCTCCATTTCAAGcggatgaccttccagctgcaaccaatcactgcgAAATCTGGACAATGTTGTGAAGttttccattgctgttgcttgtggtGTAAAAACACTTGTTGGATTTATCTAAGATTCTTCAATAAACTGCTCTTTATCATCATGACCTTGTCTCCTACTTCTGCTCCTCTCTAGCTTTCTCAGTCAACTCCTATAATGATAGATTATTAATTCAGTTAAATACTGGTTAACAGATTTGGGTATTGGAAACTCTGCTAACGTGTCCA
>TCONS_00044875
tgatttgatttcattGTCGTGTAAAAGGTCGAGCTGCTTACGACATTTGACGTTTATTTCATATTTGGGAAGATGCAACACGTGTTTTCCTGAGGAAGAAATAAGAGAATGTCTCCATTTCAAGcggatgaccttccagctgcaaccaatcactgcgAAATCTGGACAATGTTGTGAAGttttccattgctgttgcttgtggtGTAAAAACACTTGTTGGATTTATCTAAGATTCTTCAATAAACTGCTCTTTATCATCATGACCTTGTCTCCTACTTCTGCTCCTCTCTAGCTTTCTCAGTCAACTCCTATAATGATAGATTATTAATTCAGTTAAATACTGGTTAACAGATTTGGGTATTGGAAACTCTGCTAACGTGTCCA
>TCONS_00043350
GTAAAAGGTCGAGCTGCTTACGACATTTGACGTTTATTTCATATTTGGGAAGATGCAaagaggttgctggttcgagcctcggctgggtcagttggcgtttctgtgtggaatttgcatgttcttcccgtgttggcgtgggtttcctccgggtgctccagtttcccccacagtccaaagacatgtgctgtagatgaattggcggatgaccttccagctgcaaccaatcactgcgAAATCTGGACAATGTTGTGAAGttttccattgctgttgcttgtggtGTAAAAACACTTGTTGGATTTATCTAAGATTCTTCAATAAACTGCTCTTTATCATCATGACCTTGTCTCCTACTTCTGCTCCTCTCTAGCTTTCTCAGTCAACTCCTATAATGATAGATTATTAATTCAGTTAAATACTGGTTAACAGATTTGGGTATTGGAAACTCTGCTAACGTGTCCA

Function

GO:

id name namespace
GO:0003352 regulation of cilium movement biological_process
GO:0060632 regulation of microtubule-based movement biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044874 False 581 lncRNA 0.43 4 36418119 36420278
TCONS_00043349 False 539 lncRNA 0.42 4 36418138 36420278
TCONS_00044875 False 384 lncRNA 0.38 3 36418149 36420278
TCONS_00043350 True 459 lncRNA 0.43 3 36418169 36420278

Neighbor

gene id symbol gene type direction distance location
XLOC_021874 NA coding upstream 52202 36364905 ~ 36365917 (+)
XLOC_021873 copz1 coding upstream 64013 36340520 ~ 36354106 (+)
XLOC_021872 NA coding upstream 98531 36319178 ~ 36319588 (+)
XLOC_021871 NA coding upstream 100206 36317349 ~ 36317913 (+)
XLOC_021870 hnrnpa1b coding upstream 107701 36306539 ~ 36310418 (+)
XLOC_021876 NA coding downstream 38069 36458347 ~ 36488629 (+)
XLOC_021877 FO704757.1 coding downstream 70836 36491114 ~ 36491234 (+)
XLOC_021878 NA coding downstream 164901 36585179 ~ 36585751 (+)
XLOC_021879 igfbp6b coding downstream 181706 36601984 ~ 36605837 (+)
XLOC_021880 pip4k2ca coding downstream 196439 36616717 ~ 36645135 (+)
XLOC_021868 BX005254.2 non-coding upstream 263708 36150430 ~ 36154411 (+)
XLOC_021866 dre-mir-10b-2 non-coding upstream 288027 36130001 ~ 36130092 (+)
XLOC_021884 dre-mir-2191 non-coding downstream 369945 36790223 ~ 36790332 (+)
XLOC_021885 NA non-coding downstream 422354 36842632 ~ 36845980 (+)

Expression


Co-expression Network