G225550


Basic Information

Item Value
gene id G225550
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13209393 ~ 13211917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257989
gttattgtacgttgtgaagacttcaggactgttattgtacgttgtgcagacttcagtactgttattgtacgttgtgcagacttcagtactgttattgtacgttgtgcagacttcaggactgtaggtgaacgttgtgcagacttcaggactgttattgtacattgtgcagacttcaggactgttattgtacgttgtgcagacttcagtactgttattgtacgttgtgcagacttcagtacTGTTATTGTACAttgtgcagacttcaggactgttattgtacgttgtgaagacttcaggactgttattgtacgttgtgcagacttcaggactgttattgtacgttgtgcagacttcagtactgttattgtacgttgtgcagacttcaggactgtaggtgaacgttgtgcagacttcagtactgttattgtacgttgtgcagacttcaggactgtagGTgaacgttgtgcagacttcagtactgttattgtacgttgtgcagacttcaggactgttattgtacgttgtgcagacttcagtactgttattgtacgttgtgcagacttcaggactgtaggtgaacgttgtgcagacttcaggactgttattgtacgttgtgcagacttcagtactgttattgtacgttgtgcagacttcaggactgtaggtgaacgttgtgcagacttcaggactgttattgtacgttgtgcagacttcaggactgttattgtacgttgtgcagacttcagtactgttattgtacgttgtgcagacttcaggactgttattgtacgttgtgcagacttcaggactgtaggtgaacgttgtgcagacttcagtacTG

Function

NR:

description
LWamide neuropeptide

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257989 True 841 lncRNA 0.43 2 13209393 13211917

Neighbor

gene id symbol gene type direction distance location
LOC118945979 LOC106577047 coding upstream 31168 13121843 ~ 13178225 (+)
LOC110510042 LOC106578847 coding upstream 134814 13047440 ~ 13074579 (+)
LOC110510031 LOC106578847 coding upstream 146021 13051839 ~ 13063372 (+)
LOC110509994 LOC106595974 coding upstream 167712 13032077 ~ 13041681 (+)
LOC110503622 LOC106592383 coding upstream 182759 13025325 ~ 13026634 (+)
LOC110510079 LOC106577375 coding downstream 29858 13241775 ~ 13245669 (+)
LOC110510088 LOC106577399 coding downstream 34373 13246290 ~ 13290275 (+)
LOC110503641 LOC106577338 coding downstream 83595 13295512 ~ 13339225 (+)
LOC110503652 trp-ii coding downstream 144695 13356612 ~ 13358505 (+)
LOC110510128 tryp coding downstream 169214 13381131 ~ 13388307 (+)
G225547 NA non-coding upstream 12133 13197013 ~ 13197260 (+)
G225545 NA non-coding upstream 20492 13188691 ~ 13188901 (+)
G225544 NA non-coding upstream 20967 13188025 ~ 13188426 (+)
G225541 NA non-coding upstream 28752 13180436 ~ 13180641 (+)
G225475 NA non-coding upstream 140843 13068295 ~ 13068550 (+)
G225551 NA non-coding downstream 859 13212776 ~ 13212977 (+)
G225552 NA non-coding downstream 4925 13216842 ~ 13217053 (+)
G225553 NA non-coding downstream 11969 13223886 ~ 13224507 (+)
G225558 NA non-coding downstream 81452 13293369 ~ 13293590 (+)
G225562 NA non-coding downstream 86956 13298873 ~ 13299657 (+)
LOC110509979 LOC106574911 other upstream 207177 12985236 ~ 13022032 (+)
LOC110509972 LOC106596703 other upstream 232614 12972069 ~ 12977823 (+)
G225451 NA other upstream 242860 12966032 ~ 12966533 (+)
grik5 grik5 other upstream 548226 12497538 ~ 12664742 (+)
G225649 NA other downstream 279654 13491571 ~ 13491980 (+)
G225651 NA other downstream 281968 13493885 ~ 13494435 (+)
LOC110510206 LOC106577511 other downstream 305731 13517648 ~ 13520035 (+)
G225671 NA other downstream 333956 13545873 ~ 13546978 (+)
G225672 NA other downstream 338181 13550098 ~ 13550582 (+)

Expression


Co-expression Network