XLOC_021879 (igfbp6b)


Basic Information

Item Value
gene id XLOC_021879
gene name igfbp6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36601984 ~ 36605837 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043353
CGTTCTCGGTTTTGTATCCTCTGGCACTGCAGGGGGACTCACCAAGCAAAGCTGAAAAAAGCCAGCGCAGaaacagagagaggggaaagaGACTTCCAGAAATAGCATCAGCCACGTACGACAGGACCGAGCATGGAGAACCTGAGACCTGGACGCAAGATGTCTTTCCTTTCCAACTTGACAGCCGTTGTCCTGTTGCTGGTCGTCCACTGTGGATCCTGGTGTCTGGCGGGTCGCTTGGGCCCCCACAAAAACTGCCCGACATGCAAAGATGGGCACTTTTCGGGTGCAGGTCGGGCCTCCAGGGACCCGGCCGGGGCGGCCAGCACCACCGTGCTGGCGTTGGGGGAGCCCTGCGGGGTGTACACCCTAAGCTGCGCCAGGGGGCTCCGCTGCATACCCCCTCCGCGGGAACACAGCCCCCTTCAGGCTCTGCTGCAGGGCAGAGGCTTCTGCGCCAAACACAGCAGAACGAGTCCCACCGAGAGGCCCCGCCCCACAGGGCCACATCCTTCACACAGTGGTGAAATGGAAAAGGCTCCATGTCGTAAGCTGCTCAACAGTGTCTTGCGGGGTCTCGAACTCACCATTTTCCAGTCTGATCGTGACATCTACATCCCAAACTGTGACACTCGTGGCTTCTACAGGAAAAAGCAGTGTCGGTCCTCAAAGGGCATGCAGCGCGGCCACTGCTGGTGCGTGGATGAACTGGGCAACACCGTGCCATCACGTGCTGGGGAGGATGGCATTTTACCATGTGACGGAGAGTGAGGGGAGCGAGGGTCCCGCAGCTCTGAGcctggaggaagaggaagaggaggggTAGACGGGGAGAGGGGATgatttcagcttggtgcaagacaCTGCCTGACCAGGACACACCAGGGATAAACCACTTCAACATGGAAACGGGCCCTCACTCCGAACGTCCAGAACACGTTCACTGCCATAAACTCGAACATTATGAATAAGACAGCGTCAGAATACAGAAATAATGACCACTACACCACATGAGCTTAAGTCAGTTGTTACAGAGATATTTCATTTCTGGTCCTACAGTGCaagtactggttttggtggttaaTTGGGACACAGATTTGTATGGGTATGACCCAGGTATTacaatgttgaggtggtttatgaggacatgccttgtgtcctcgTAGTTCAATAATggtaaaaatcatacttaatttacagtgaggattgggtttaggggtagtgGGTAGGGTAAGTAAAAAATCAAGTACATCCaggtagtttttaatagcagaataaATCTAGACAAACTAAAAACAACCAACTGGATGTATTTTATGCCGCTTATTACATGGCTGCGtgcc

Function

symbol description
igfbp6b Predicted to enable fibronectin binding activity; insulin-like growth factor I binding activity; and insulin-like growth factor II binding activity. Predicted to be involved in regulation of insulin-like growth factor receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in obesity. Orthologous to human IGFBP6 (insulin like growth factor binding protein 6).

GO:

id name namespace
GO:0043567 regulation of insulin-like growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0031994 insulin-like growth factor I binding molecular_function
GO:0031995 insulin-like growth factor II binding molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090521-2 Predicted to enable fibronectin binding activity; insulin-like growth factor I binding activity; and insulin-like growth factor II binding activity. Predicted to be involved in regulation of insulin-like growth factor receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in obesity. Orthologous to human IGFBP6 (insulin like growth factor binding protein 6).

Ensembl:

ensembl_id ENSDARG00000090833

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043353 True 1343 mRNA 0.53 4 36601984 36605837

Neighbor

gene id symbol gene type direction distance location
XLOC_021878 NA coding upstream 16233 36585179 ~ 36585751 (+)
XLOC_021877 FO704757.1 coding upstream 110750 36491114 ~ 36491234 (+)
XLOC_021876 NA coding upstream 113355 36458347 ~ 36488629 (+)
XLOC_021875 NA coding upstream 181706 36418119 ~ 36420278 (+)
XLOC_021874 NA coding upstream 236067 36364905 ~ 36365917 (+)
XLOC_021880 pip4k2ca coding downstream 10880 36616717 ~ 36645135 (+)
XLOC_021881 gpr182 coding downstream 47539 36653376 ~ 36655640 (+)
XLOC_021882 tspan31 coding downstream 124876 36730713 ~ 36750301 (+)
XLOC_021883 march9 coding downstream 165756 36771593 ~ 36798620 (+)
XLOC_021884 dre-mir-2191 coding downstream 184386 36790223 ~ 36790332 (+)
XLOC_021885 NA non-coding downstream 236795 36842632 ~ 36845980 (+)
XLOC_021886 CR926464.1 non-coding downstream 285892 36891729 ~ 36895369 (+)
XLOC_021887 NA non-coding downstream 420513 37026350 ~ 37038409 (+)
XLOC_021889 NA non-coding downstream 507450 37113287 ~ 37118114 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01999489_02002753 IGFBP6B, IGFBP6 coding CI01000001 null 1998128 ~ 2002928 (-)