G226326


Basic Information

Item Value
gene id G226326
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13415229 ~ 13429753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU258885
CGGGAGAGAACACTGGTGAAATGCCTCCAATGTCTCAATGCCAGTGGCCTTCACTTCCTGAGAAAACACTCCTATTTCCCTGAATCGTCAGTTAGTCATGACTGATCACACACACCCTAGTGTTTGACCTCCCATGAACTACCAACAGTCTGACTCAGTCATCTTGTGCTTCCTAGAATGTCCCTGAACATGAAGCCATAAAGGACGTAACCGGCAACATGTCACAATACTTCATCAAAGGCACAGGTCAAATAAAGCCTTTTATGGTGGTCCAAAAACACTCCAAAGTTCATTGAGTTACTAGCTTCCTGTAAACCATTCCAGAATGACAAACAAAAACAGCACAAATAAGAGGGgcagagagtggggagggagagaagggggagcacAGGGTAAGAAAGCCAGGGAGAGGAATAGCTGGAAGCGGTATAGGCATGGGGAAAGACGGGATAAGAGGGAAaatcccttccctctcccctgctgGCTGTGTGTCCACAGAGTTACATTCCAATGAAATGAGCAGATAAACCAGAAGaacagaggagtggaggggagagttCTAGGTATGAGGAAAAGCCTTGAATGGGTGGGTGTGTGCCAGACAAAGATAAGGATACAAagaacagggggggggggagaaggtaAAAACAAAGAGAAATTAGAGGTGTGCATAGGGTGTACTTCCTGTTAATGTTCTAGTTGTGCAACTTCCCAGGAAAGACTAACAAAGTCCCTTACCATACCATGGAAGAGCTTATTTTACTAGTTCCTTACAAGTTTCAATAATTTGTATAATTTATGCAGTTATAGGAGGGGTCAACTCACAATGTACTGAGAtaaaatcagagagagagacgatcagagagagagagagacagccagagagatggagacTAGCGCAGAAAGGGAAAGTCCCGGATTCTACCCTCTAAACCTCAGCAACAAGGTATGTTGagaaacagagcagagcagggggggggggggggtcatgtgaCTTCTCAGAATGAGGATACTAAGTGCACATACACATGCACTGTAGAAGCCTCACACAATACACTGCATGCCACaagcacacccacacagacagacaaagcatAATGTACAAAGTGGCAACAGCAGCGTTAAGGACATGGTCATTAATTTGCAATATCTGAACAGTTTCCAGGGAACTTGAATAACCTAACATGGGAGTAACATTGGCCAGAGAATTGGGAAGTGCACCAGCTTGTAGATGTCAGTGTTTGGTTAGTAGTAGTGACAGTGTTTGGTTAGTAGTAGTGACAGTGTGGGAGTATCAAACAGCTGTTTCATAGCACCAGTGCTGCAGCTGATCTGGTAATCGCACAATGTGCACATGCAACTCAGTACTGATATTAACTCTGTCAAACCGTTGAATAAAATTGACCACTGAAGTATTGTTTGGACTGCACAACACATGTTGAACTGCTAgagaaagttatttttttgctgacaTAGTATGATTATCTGGCATTGCCAAAAGAGCTTGGTAGGCTTTATGTAAAGTTATTGTGGAGTGTGTTTAAGATTTTTATTTGGGGTTACAGACTATCCTATTTAGTCAATTACTTGTGATTATAACGGACAAATCTAATAAACAATTAGAAAATGGGTTCTCAGGCTAGGCAATTGGTCTGTGCTAGATAACAAAAAGACCCTATCTGGTAGTCACATCGTGGCGAGCATCATGTCTCTCAGCCTGGACTGAAATCTCCCCCTGGCCCCTCACACGAACGTATACAGCCTGTCTGCTAGACTATGCACTACAGACAGGATATCACTGTAAATGCCTCAGTCTCACCTCAACGGTGAGAACACACAACAAATGGTACCTACGTTATTTCTGGTAAGTGAGCAATGTGTTGTCTGAAACCCCAGTTGTGCGTATGAAGGGTTCAGGGTGATTTCTCTGGGGTGATTAAGCAGACTAACAGAGCTGCAGAGGGAATGTGGCATTGACAGGGTGTGGTGGCACGCTGGAGGGAGGAAGTGGACTCATTTGAAAGTGATGGGGAAAGGCCATGGGGCATTGATGGACTGGGAAAGGTGCAGAAGATGGAACCCAACAGAAAAGAGAACATCACTTCAGAACACACAGCCCTGAACAAAGGATACCAATCATAGCACATCCTTCCAAGCAATAGGCTTGTGCGTGTGACCTTGGCCTGCATTAAGCACAGGTAACCAGAAACTGTACATTTCTTCTGATAACCGGCAGCCGagaggtgtctgtctgtgtacggTAAAGAGGCTGAGCGAGGAGGAAATCAAGGACTTCCTCTTTCACACCTTTCCTTATTGTGCTCTGAAGTCTGCAGTGagtggcaggtgtgtgtgtgtgtgtacatgttttccTATATTATCAGGACCCCAATGTCCTaatatttcactgtaatgtcctGAAAAAGTAGGAAAACAAATGCTATTTTAAGCTTAAGGGTTTTGGGGTTAAGGAAAATAAGAATTTTACACTCCAATAACTCCTGACATTTCTGAAAACACAGCTGTGTGTGCTCGTGCATGTACCTCACCTGTCTCAGGTTGTTATAGATGTCCAGGTCTGTGTGAACCAGTTCCAGGAGAAGGATCATTCTTTGGATCTGAGCTTCCTGCCCCTGCACCACTGCTATGTGAAGAgccGTGTCGCCATCGTTGTCTTGGCGAGTCGCCAGGGCAACATCTGCCAGCAGGTGTCCGGCGTGTCCCGGGtaaagagaggactggaggggagagacaggcaCGTTCACAACCAGCGGTGACCTGCTGGGCCAGGAGTAGAATGGGTGCCCTGGATAGTGATAGTAAGGACGGGGTGCCTGCATTGAACGAACCGGATCGATGCTTTGGTGTTCATTGTCAAAACCGCTGGCGGCGGACAATTGTCTGTGTGAGACCGATGCCAGGGTACCAATGCTCTCATCGTCGTAGCTCTTTAATAACATCTTTGGAGGACTCGGTCTGCAGCACAAGTCTTTGTTTTTGTAAGGGGATAAGCGCTCATCTCTCCCGGGTGGGGTACGTGACTGTTCCGGCGTCTCCCATTCAGAAGGAAATGGACGTTTCCTAAAAGGAAGCCACGAGGAAGATATGTTCTGTGTTCGTGTGTCTGTTGTGCTGCTCTCGCCATGGTTCGGAGTGAATGGCGTGTGATAAGTTGCAGCTGGTGAGTGTTTTTTCTCCAGAAAAGCCGGGTTTCCCGGTTTCACAGGAGGTTTTATCAACGATACTCCACAACGATGCTCCAGCGGCTCCACAGTGTGGCTGGGATTTCCGTTTGGACCGTCATCCTCCGTGAGGGGGGCAGCGGGATACTGCATTCTTAAACTGGCGGAGCGACCTTTGCTGGTGGGAGTCCTCTCGGCGCCGCTCCCACGCTCCCTCGTTGTGGTGCTCAGATCCAGCGGCACTGTGGTTTGAGTCTGGTGACCGGTCATGGTCCTCGGCATGAACACGGATCAAGTATCCTGGAATCAGCCTCGGGTGTTTGTCGTCTCAAAACATAGCAGTGATTCAAATGTCAATTAAATGTATGTTTTCTATAGCCTAGGCACAGTCTCCTTCTCCACGAAAATATCCTAATGTTGTTTTGGGAGTTTAATAATGTAATTTGCCAAGCCAATACAAGAATGGCTCGAGGCTATTCTCCAAATCCACAAATGTTCATTTTGAGAAAATTAGTGTAAACTGATACTAATTTAAGTTTCTTCAATTAATTAAAATCACACAACTGACTTATAGTCAATGTTCAGAATGATAAATATAAATCTTTTAAATAACCTAACTGACGGTAACACACCTGCAATATAACTGCAGGTAGTAGGCAATTGAAGAAAATCAATAGGATATTATGTTCCTTCTTTTATTGCAACGAATCAACTAGTCCgtaaacgctctctctctctctctctctctctctctctctcattcacttaACCAAATCCGCGAAACTGGGGCTTTCCCTTTCGTATAAGAATTAACTCTTTACCTTCCTGTTTGCAAACTGAAACAATGCGTTCTGACGGTCTACTTTTTTTTAACCAACAACTTTAAGATATTAAAGGTTTAGTGTAGTCTACGTAACTGAAGTGTTCAATGTTAATTAAGGCATATATGATTGAT
>TU258890
CAGGGTAATGTACTTCTTTACAGTCTACCACTTCATCAAGTAGTTTGACTTCATAAGAACAGCACCCAAACATGAGAACAGCACCCAAAAGCCCCAGCGCAACCACCAAGGGCGACTAACTTACAGTAAGGACGGGGTGCCTGCATTGAACGAACCGGATCGATGCTTTGGTGTTCATTGTCAAAACCGCTGGCGGCGGACAATTGTCTGTGTGAGACCGATGCCAGGGTACCAATGCTCTCATCGTCGTAGCTCTTTAATAACATCTTTGGAGGACTCGGTCTGCAGCACAAGTCTTTGTTTTTGTAAGGGGATAAGCGCTCATCTCTCCCGGGTGGGGTACGTGACTGTTCCGGCGTCTCCCATTCAGAAGGAAATGGACGTTTCCTAAAAGGAAGCCACGAGGAAGATATGTTCTGTGTTCGTGTGTCTGTTGTGCTGCTCTCGCCATGGTTCGGAGTGAATGGCGTGTGATAAGTTGCAGCTGGTGAGTGTTTTTTCTCCAGAAAAGCCGGGTTTCCCGGTTTCACAGGAGGTTTTATCAACGATACTCCACAACGATGCTCCAGCGGCTCCACAGTGTGGCTGGGATTTCCGTTTGGACCGTCATCCTCCGTGAGGGGGGCAGCGGGATACTGCATTCTTAAACTGGCGGAGCGACCTTTGCTGGTGGGAGTCCTCTCGGCGCCGCTCCCACGCTCCCTCGTTGTGGTGCTCAGATCCAGCGGCACTGTGGTTTGAGTCTGGTGACCGGTCATGGTCCTCGGCATGAACACGGATCAAGTATCCTGGAATCAGCCTCGGGTGTTTGTCGTCTCAAAACATAGCAGTGATTCAAATGTCAATTAAATGTATGTTTTCTATAGCCTAGGCACAGTCTCCTTCTCCACGAAAATATCCTAATGTTGTTTTGGGAGTTTAATAATGTAATTTGCCAAGCCAATACAAGAATGGCTCGAGGCTATTCTCCAAATCCACAAATGTTCATTTTGAGAAAATTAGTGTAAACTGATACTAATTTAAGTTTCTTCAATTAATTAAAATCACACAACTGACTTATAGTCAATGTTCAGAATGATAAATATAAATCTTTTAAATAACCTAACTGACGGTAACACACCTGCAATATAACTGCAGGTAGTAGGCAATTGAAGAAAATCAATAGGATATTATGTTCCTTCTTTTATTGCAACG

Function

NR:

description
B-cell lymphoma 3 protein homolog

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU258885 False 4137 lncRNA 0.45 3 13415229 13429753
TU258890 True 1194 lncRNA 0.46 2 13415478 13419334

Neighbor

gene id symbol gene type direction distance location
LOC110510106 LOC106577440 coding downstream 4558 13388409 ~ 13410671 (-)
LOC110510120 LOC106577461 coding downstream 36470 13376855 ~ 13378759 (-)
LOC110503661 trp-i coding downstream 54267 13359882 ~ 13360962 (-)
LOC110510138 trp-ii coding downstream 67357 13346109 ~ 13347872 (-)
LOC110510146 mrpl17 coding downstream 73384 13339193 ~ 13341845 (-)
LOC110510167 LOC106577478 coding upstream 5843 13435596 ~ 13439420 (-)
LOC110510175 LOC106577487 coding upstream 11031 13440784 ~ 13459048 (-)
LOC110505114 NA coding upstream 33881 13463634 ~ 13474497 (-)
LOC110510190 LOC106577499 coding upstream 50366 13480119 ~ 13481941 (-)
LOC110510231 LOC106577531 coding upstream 128740 13558493 ~ 13678675 (-)
G226325 NA non-coding downstream 105 13414228 ~ 13415124 (-)
G226314 tryp non-coding downstream 28086 13381106 ~ 13387143 (-)
G226206 NA non-coding downstream 72142 13342756 ~ 13343087 (-)
G226291 NA non-coding downstream 80870 13333214 ~ 13334359 (-)
G226242 NA non-coding downstream 162016 13253005 ~ 13253213 (-)
G226334 NA non-coding upstream 53 13429806 ~ 13430023 (-)
G226335 LOC106577470 non-coding upstream 2572 13432325 ~ 13433104 (-)
G226361 NA non-coding upstream 31805 13461558 ~ 13461866 (-)
G226371 NA non-coding upstream 57253 13487006 ~ 13487717 (-)
G226294 LOC100136012 other downstream 70854 13344074 ~ 13344375 (-)
G226224 NA other downstream 190714 13223884 ~ 13224515 (-)
G226187 NA other downstream 234957 13177178 ~ 13180272 (-)
G226124 NA other downstream 347872 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 942169 12472299 ~ 12473060 (-)
wu:fe05a04 LOC106578221 other upstream 496921 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 569983 13995196 ~ 14023153 (-)
G227060 NA other upstream 999040 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 1093427 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 1169036 14598789 ~ 14638314 (-)

Expression


Co-expression Network