XLOC_021880 (pip4k2ca)


Basic Information

Item Value
gene id XLOC_021880
gene name pip4k2ca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36616717 ~ 36645135 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043354
GCGAGCACAGCGGAAAACAGGCCCTCGTGGCTCGTGTTTTCTCTCGACCTTTGATTGTCAGTTAGAGGACCCGGAGCAGGAACAGAGGGAGGCGGATCCGCGAGGAAAACAGACCGCTGCGCTACAGGGGAGTGACCCGTGATGATGGCGTCTCTCGGTAACTCCGGCAGCGCCTCCAGCCCGATGGTCATGCTCGCTCCCAAAACCAAGACTAAAAAGAGACATTTCATGCAGCAAAAGGTGAAGGTGTTCCGGGCGAGCGACCCGATGCTCAGCGTGTTCATGTGGGGCGTAAATCATTCGATCAATGATTTAAATCAAGTTCCAGTGCCTGTCATGCTGCTCCCTGACGACTTCAAAGCCAACACCAAAATTAAAGTGAACAACCACCTCTTCAACAAGGAGAATCTTCCAAGCCATTTTAAGTTCAAGGAGTATTGTCCACAAGTTTTCAGAAACCTCAGGGAGCGATTTGGAATTGAAGATCTTGACTACCAGGCATCTCTGGCCCGCAGTGCTCCTATGAAAGGCGACGGACAGGGGGAAGGTCTTCTCTTCACGTCCTATGACCGCACGCTGATCGTCAAGCAGATCTCCAGTGAAGAAGTAGCCGATATGCATAACATTCTGTCCGAGTATCACCAGCATATAGTGAAGTGTCATGGCAGCACACTCCTCCCTCAGTTTCTGGGCATGTACCGCATTACGGTGGAGAGCGAAGACACGTACCTGATTGTCATGAGGAACATGTTCAGCCACAGACTCCTCGTCCACCGAAAATACGACCTGaaggGTTCTCTGGTAGATCGTGAGGCCAGTGACAAAGAGAagGTAAAAGAGCTGCCCACTTTTAAAGACATGGATTTCAGAAATAACATGCAGAAGGTTTATGTGACAGAGGAACAGAAAGAGAAGATGATGGAGAAGCTCAATCGAGATGTAGAgTTCCTGGTGAAGCTGAAGATAATGGACTACAGTCTTCTTCTGGGCATCCATGACGTGGCGCGAGGTGAGCGTGAGGAAGAGGAGGCCGAAGAGCCCTGCTACGAAGACGATGCTGATCCAGAGAACGGTCTGGCTCCGGCTCTGCAGGTGGGCTCCTACGGGACGTCCCCTGAGGGCATCGCTGGATACATGAACTCCATCAAACCGCTGGGCCCTGGAGAGTTTGACCCTTACATTGATGTATACGCTGTCAAAAGTGCTCCAGGAGCGCCGCAGAGGGAGGTGTATTTCATGGGCCTGATCGACGTGTTGACTCAGTATGACACTAAGAAGAAGGCAGCACACGCCGCAAAGACTGTTAAACATGGCGCTGGTGCTGAAATATCTACGGTTCATCCAGAACAGTACGCCAAACGATTCCGAGAATTCATCTCCAACATTTTTGCATAACCTCTTCTGGATCAACACTTTAAGggtgacAATATGACATGGATCTTGTTCTTCAGCAGTTTCATCAGATCCTCTCAACACAACTTTGCAGTTTCTGTCCATTCCCATCACATAGGTTTATTTTCTCCTCCTTCTAGCATCTGTTTAATGTTTTCAGAAAAATGATCCTGATGATCTTAAAGCGTGACACGTTAGCAAGAACCGGACTCTCTCATCCACACTCCAGCATTGTACATCAACCGTGTGTTTCACAAATCAATAGAAATCAGTCACCTCGTGGCTCCATCCACAAATATGTGCGCATTTGCCTAATCTTTTAAGAAGATATTAAACCCGTAGCAGTGACATAACTATAGCCCCTGGTGTGTTTTCTCCCTCTCTCTGGACTTTGGATAGGCAGAGAGAGAAACCACCGCCTTAAACCCAGTATGAAGGAAAAATAGCTGAAAATCATGCTTAAAGTGCATGTTAGCCTCACTTCATGCATACCTGTACAGCACTCGAATGTTGGAAAGATACTTTAGAAGacgtcaaaacaaaaacatatataagGGCAGCCAGAGACCGTAAACGTGTCTGGATTAAAGTAATATTCTGAATTGAATGCCGACTGTTTATATGTGGATGGACGGAGCACACATTATTACACGTATATCTCTCATATTTGAGCTACTTTATGCAGTTAGCCTTATAAGAGGGATTTTTTCTTGGTAGTTTGTAGCTGAAATACACTGCGCTGATTTAGGATGAAATGCCTTattgttgcattttatttatttttttgcgaaTCAGTGTTTTGGAccaaatatatttttcaagagaccagattcccctcc

Function

symbol description
pip4k2ca Predicted to enable 1-phosphatidylinositol-4-phosphate 5-kinase activity. Predicted to be involved in 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process. Predicted to act upstream of or within phosphatidylinositol metabolic process and phosphorylation. Predicted to be located in endoplasmic reticulum. Is expressed in gut; pectoral fin musculature; polster; and pronephric duct. Orthologous to human PIP4K2C (phosphatidylinositol-5-phosphate 4-kinase type 2 gamma).

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function
GO:0016309 1-phosphatidylinositol-5-phosphate 4-kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030828-9 Predicted to enable 1-phosphatidylinositol-4-phosphate 5-kinase activity. Predicted to be involved in 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process. Predicted to act upstream of or within phosphatidylinositol metabolic process and phosphorylation. Predicted to be located in endoplasmic reticulum. Is expressed in gut; pectoral fin musculature; polster; and pronephric duct. Orthologous to human PIP4K2C (phosphatidylinositol-5-phosphate 4-kinase type 2 gamma).

Ensembl:

ensembl_id ENSDARG00000031020

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043354 True 2231 mRNA 0.47 11 36616717 36645135

Neighbor

gene id symbol gene type direction distance location
XLOC_021879 igfbp6b coding upstream 10880 36601984 ~ 36605837 (+)
XLOC_021878 NA coding upstream 30966 36585179 ~ 36585751 (+)
XLOC_021877 FO704757.1 coding upstream 125483 36491114 ~ 36491234 (+)
XLOC_021876 NA coding upstream 128088 36458347 ~ 36488629 (+)
XLOC_021875 NA coding upstream 196439 36418119 ~ 36420278 (+)
XLOC_021881 gpr182 coding downstream 8241 36653376 ~ 36655640 (+)
XLOC_021882 tspan31 coding downstream 85578 36730713 ~ 36750301 (+)
XLOC_021883 march9 coding downstream 126458 36771593 ~ 36798620 (+)
XLOC_021884 dre-mir-2191 coding downstream 145088 36790223 ~ 36790332 (+)
XLOC_021885 NA coding downstream 197497 36842632 ~ 36845980 (+)
XLOC_021874 NA non-coding upstream 250800 36364905 ~ 36365917 (+)
XLOC_021886 CR926464.1 non-coding downstream 246594 36891729 ~ 36895369 (+)
XLOC_021887 NA non-coding downstream 381215 37026350 ~ 37038409 (+)
XLOC_021889 NA non-coding downstream 468152 37113287 ~ 37118114 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01976950_01992032 GPR182, PIP4K2CA, PIP4K2C coding CI01000001 null 1976716 ~ 1993561 (-)
bowfin (Amia calva) AMCG00008830 pip4k2c,LOC103385206 coding CM030126.1 CM030126.1 12899895 ~ 12907881 (+)