G226371


Basic Information

Item Value
gene id G226371
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13487006 ~ 13487717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU258936
GTCTGGGCCAAAGGGCACTCAGCTGGGTCCTGTTTTGAAGGATTGATTCCattctccgtgtgtgtgtggtcagtcaTCTGCTTCTGACTCACTGATTTTGCTTTTGTAGCTGACAGGTGGCAACTTGCACCGAACAATAGGTTGACCTCACCTCCAATGCCCTTTTTTTACATAGAAATACAGTGTCCGTTCACTAGCAAACACAAGGACCATAAATCAAACACAGTTCACTATGTAAAAATGCTGCTCCAATGAACATAAGGAACACTGTAAGGACCATTTCCGTACTTGTCTCTTGTCGTTCTTATCTATTAGCCTTTTGCCAGTTCATTATAGGCTTAGATGTGGGCCCTTTATTCAGTCTATCATCACAGAACCCCTGTGACAATAAGGCAGATCTCATAGATTTGTTTTACAGTCTTACTACCAGGCAAAGATCTAAATCAACATCCACTTTTGGTTTATGCTGAGTATTCACGTTCCCTGTTATCACAGAGTTGTTTTATGGACATACGTTCTGCTACCCAATGCAGGTAACAGTAAACAATTAATATGCTTGTCTAACAGTGTTTGGAGGGTTAACAGTATGGCCAGTAGAAAGCGTTTGACAGGCCATTTATATTAGGTTGATAATGTAATGATGTTGAACAGAGGAAGTTCATGGCTAACCCAGCAGGGTTAACGGTTACTGGTGCCAGTGGCAGTTTGGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258936 True 712 lncRNA 0.42 1 13487006 13487717

Neighbor

gene id symbol gene type direction distance location
LOC110510190 LOC106577499 coding downstream 5065 13480119 ~ 13481941 (-)
LOC110505114 NA coding downstream 12509 13463634 ~ 13474497 (-)
LOC110510175 LOC106577487 coding downstream 27958 13440784 ~ 13459048 (-)
LOC110510167 LOC106577478 coding downstream 47586 13435596 ~ 13439420 (-)
LOC110510106 LOC106577440 coding downstream 76335 13388409 ~ 13410671 (-)
LOC110510231 LOC106577531 coding upstream 70776 13558493 ~ 13678675 (-)
rs19 LOC100689943 coding upstream 230527 13718244 ~ 13723892 (-)
LOC110510240 LOC106577561 coding upstream 255816 13743533 ~ 13883559 (-)
LOC110510354 LOC106578237 coding upstream 398831 13886548 ~ 13902511 (-)
LOC110510306 LOC106578229 coding upstream 418628 13906345 ~ 13909374 (-)
G226361 NA non-coding downstream 25140 13461558 ~ 13461866 (-)
G226335 LOC106577470 non-coding downstream 53902 13432325 ~ 13433104 (-)
G226334 NA non-coding downstream 56983 13429806 ~ 13430023 (-)
G226326 NA non-coding downstream 57253 13415229 ~ 13429753 (-)
G226372 NA non-coding upstream 337 13488054 ~ 13488306 (-)
G226374 NA non-coding upstream 4434 13492151 ~ 13492412 (-)
G226375 NA non-coding upstream 4968 13492685 ~ 13493093 (-)
G226355 NA non-coding upstream 5725 13493442 ~ 13494253 (-)
G226340 NA non-coding upstream 30007 13517724 ~ 13587278 (-)
G226294 LOC100136012 other downstream 142631 13344074 ~ 13344375 (-)
G226224 NA other downstream 262491 13223884 ~ 13224515 (-)
G226187 NA other downstream 306734 13177178 ~ 13180272 (-)
G226124 NA other downstream 419649 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 1013946 12472299 ~ 12473060 (-)
wu:fe05a04 LOC106578221 other upstream 438957 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 512019 13995196 ~ 14023153 (-)
G227060 NA other upstream 941076 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 1035463 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 1111072 14598789 ~ 14638314 (-)

Expression


Co-expression Network