G226338 (apoa2)


Basic Information

Item Value
gene id G226338
gene name apoa2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13529631 ~ 13532702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU258903
TATCAGTCGAGAGTTTCAGCTTTCAGATCTTTattgaacacaaacacacacacacacacaaactcctgtTAGAGTATCAAACACATAGTTATATACATGCACAATGTTGAATGAATGTTAAAGCTCTTTCGAGATGTCAATCTTCCTATCTACCATGTTTTGACTTTCGTTTCCCTATGAATAGTCATGTCTAGGAAAGTGTTGACATAGAAAACGGGAGGGGATGCGTTTTGCATTGTGCATTTCTCTTCTCAATCACCTTGAGGTATTTCCCCCCTCTAGCATTTAATACATGTATCAGGAGCACAGCTAAAGCAGAGCCAAGCCCTGTGTGGAAAGGTACAAGCGTGTGGGGCGGTCCGATGCGACGGAGGCTATCTAGGGCTCATTCCTCGGCGGGTAGGACTTTGTCGAGGTAAACCTTGATGGAGGTGATGGCCTCGTCCAGGTAGGTGCCGACATGGGGGCGCACATAGTGTCCGTACAGACCCAGGCCGGCCATACGGGCCTTGTCCACCAAGGGTGCTGCTTCCTGGGCCAGACCGTTCCGATCTTGACAGCGCTCAGGAATTTGGGGTTGCCCTGCAGCTCCTCGATGTAGTCTTTGGCAGCCTGGCCGTGGCCCTGGCCCAGGTTCTCAGTCATAGGCCCCACAGCAGCCTGCACCTTGCTGTAGGCGTTCATCAGCCTCTTGTAGAACACAGACTTCATGGCCTCATACTTCTCCACCAGCTCCTTGTCTGGCTCTGGTACTTGACACAGGCACACAGAGACTTGGAGTGCAAGCACTAAGGCTAATGCCAACTTTCCGTTCATTTCTCCTGTTGTAGTGGGTGTACAGATCCCAGTGAAATAAATGACAGTCTCCTTTGGTGGCTGAGTTGTCTGTAAAGAAATCTGGGCAAGTAGGCACCATGATA

Function

symbol description
apoa2 Acts upstream of or within chordate embryonic development; epiboly involved in gastrulation with mouth forming second; and nuclear division. Is expressed in liver and yolk syncytial layer.

NR:

description
PREDICTED: uncharacterized protein LOC106605687

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258903 True 920 lncRNA 0.50 4 13529631 13532702

Neighbor

gene id symbol gene type direction distance location
LOC110510190 LOC106577499 coding downstream 47690 13480119 ~ 13481941 (-)
LOC110505114 NA coding downstream 55134 13463634 ~ 13474497 (-)
LOC110510175 LOC106577487 coding downstream 70583 13440784 ~ 13459048 (-)
LOC110510167 LOC106577478 coding downstream 90211 13435596 ~ 13439420 (-)
LOC110510106 LOC106577440 coding downstream 118960 13388409 ~ 13410671 (-)
LOC110510231 LOC106577531 coding upstream 25791 13558493 ~ 13678675 (-)
rs19 LOC100689943 coding upstream 185542 13718244 ~ 13723892 (-)
LOC110510240 LOC106577561 coding upstream 210831 13743533 ~ 13883559 (-)
LOC110510354 LOC106578237 coding upstream 353846 13886548 ~ 13902511 (-)
LOC110510306 LOC106578229 coding upstream 373643 13906345 ~ 13909374 (-)
G226355 NA non-coding downstream 35378 13493442 ~ 13494253 (-)
G226375 NA non-coding downstream 36538 13492685 ~ 13493093 (-)
G226374 NA non-coding downstream 37219 13492151 ~ 13492412 (-)
G226372 NA non-coding downstream 41325 13488054 ~ 13488306 (-)
G226371 NA non-coding downstream 41914 13487006 ~ 13487717 (-)
G226389 NA non-coding upstream 7769 13540471 ~ 13541320 (-)
G226422 NA non-coding upstream 87853 13620555 ~ 13623391 (-)
G226429 NA non-coding upstream 106103 13638805 ~ 13639774 (-)
G226446 NA non-coding upstream 158723 13691425 ~ 13691641 (-)
G226447 NA non-coding upstream 160254 13692956 ~ 13693168 (-)
G226294 LOC100136012 other downstream 185256 13344074 ~ 13344375 (-)
G226224 NA other downstream 305116 13223884 ~ 13224515 (-)
G226187 NA other downstream 349359 13177178 ~ 13180272 (-)
G226124 NA other downstream 462274 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 1056571 12472299 ~ 12473060 (-)
wu:fe05a04 LOC106578221 other upstream 393972 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 467034 13995196 ~ 14023153 (-)
G227060 NA other upstream 896091 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 990478 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 1066087 14598789 ~ 14638314 (-)

Expression


Co-expression Network