G226389


Basic Information

Item Value
gene id G226389
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13540471 ~ 13541320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU258954
TTACTGGTTTTCTACAAACGCATGTTTTTATTTAAAGATACgttgacataaaaaaaaacatttaaagaaggattttcctactagcactgactttgctgatagctactttattatACTTGCTacaactgtgatatgtggttgtctcacctagctatcttatgatgaatgcactaattgtaagttgctctggataagagcatctgctaaatgactaaaatgtcaaatgttgacATTAAATAATACTGTATTTCAATCTACACAGACTCCAGGGGGACGTCACCGAGGGTTGGAGGTCTGGTGAAGCTGATCAGAGGCTCCAGGATGAGAGAGTAGGGGCCCACAGCTGCAACGCTCTCCTCGCCAAGACATTTTGAGTACATTGGGGACACAGAGGGAAACAAGGAAGGGTCTTTACTGTTGGTATAAGATGTGGTAGACCTGGTCCTGCAGGATGCCGGAATAGGTCCTCACCACCATGCTGGTATCAACAAAGGCATTCCTGATGGACACAGACACATGAACAATGCATTAACTGTCAGCCTGCTATCTTGACCTGCTgttccgttcgtgtgtgtccgtgtgtgtgtcttactTGGCCTTCTCCTCCAGCTTCAGACCCTTGATGCTGTCCAGCCAGCTAGAGGCGGTGCTGATGGATGTTTCGTAGTAGCTCTCGACGGCGCTGGTCAGATTTTCCAGGGTTCCCTGCGCTCCATCAGCCTCGGCAACATCAGCGGCCGGTTCCTCAGGCGTACCCTCCTCAGCTTGCCTAGGCAGACGGAGGCCCTGAGCAT
>TU258955
TTACTGGTTTTCTACAAACGCATGTTTTTATTTAAAGATACgttgacataaaaaaaaacatttaaagaaggattttcctactagcactgactttgctgatagctactttattatACTTGCTacaactgtgatatgtggttgtctcacctagctatcttatgatgaatgcactaattgtaagttgctctggataagagcatctgctaaatgactaaaatgtcaaatgttgacATTAAATAATACTGTATTTCAATCTACACAGACTCCAGGGGGACGTCACCGAGGGTTGGAGGTCTGGTGAAGCTGATCAGAGGCTCCAGGATGAGAGAGTAGGGGCCCACAGCTGCAACGCTCTCCTCGCCAAGACATTTTGAGTACtTGGCCTTCTCCTCCAGCTTCAGACCCTTGATGCTGTCCAGCCAGCTAGAGGCGGTGCTGATGGATGTTTCGTAGTAGCTCTCGACGGCGCTGGTCAGATTTTCCAGGGTTCCCTGCGCTCCATCAGCCTCGGCAACATCAGCGGCCGGTTCCTCAGGCGTACCCTCCTCAGCTTGCCTAGGCAGACGGAGGCCCTGAGCAT
>TU258956
TTACTGGTTTTCTACAAACGCATGTTTTTATTTAAAGATACgttgacataaaaaaaaacatttaaagaaggattttcctactagcactgactttgctgatagctactttattatACTTGCTacaactgtgatatgtggttgtctcacctagctatcttatgatgaatgcactaattgtaagttgctctggataagagcatctgctaaatgactaaaatgtcaaatgttgacATTAAATAATACTGTATTTCAATCTACACAGACTCCAGGGGGACGTCACCGAGGGTTGGAGGTCTGGTGAAGCTGATCAGAGGCTCCAGGATGAGAGAGTAGGGGCCCACAGCTGCAACGCTCTCCTCGCCAAGACATTTTGAGTACATTGGGGACACAGAGGGAAACAAGGAAGGGTCTTTACTGTTGGTATAAGATGTGGTAGACCTGGTCCTGCAGGATGCCGGAATAGGTCCTCACCACCATGCTGGTATCAACAAAGGCATTCCTGATGGACACAGACACATGAACAATGCATTAACTGTCAGCCTGCTATCTTGACCTGCTgttccgttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgtgtgtgtgtcttactTGGCCTTCTCCTCCAGCTTCAGACCCTTGATGCTGTCCAGCCAGCTAGAGGCGGTGCTGATGGATGTTTCGTAGTAGCTCTCGACGGCGCTGGTCAGATTTTCCAGGGTTCCCTGCGCTCCATCAGCCTCGGCAACATCAGCGGCCGGTTCCTCAGGCGTACCCTCCTCAGCTTGCCTAGGCAGACGGAGGCCCTGAGCAT
>TU258957
TTACTGGTTTTCTACAAACGCATGTTTTTATTTAAAGATACgttgacataaaaaaaaacatttaaagaaggattttcctactagcactgactttgctgatagctactttattatACTTGCTacaactgtgatatgtggttgtctcacctagctatcttatgatgaatgcactaattgtaagttgctctggataagagcatctgctaaatgactaaaatgtcaaatgttgacATTAAATAATACTGTATTTCAATCTACACAGACTCCAGGGGGACGTCACCGAGGGTTGGAGGTCTGGTGAAGCTGATCAGAGGCTCCAGGATGAGAGAGTAGGGGCCCACAGCTGCAACGCTCTCCTCGCCAAGACATTTTGAGTACATTGGGGACACAGAGGGAAACAAGGAAGGGTCTTTACTGTTGGTATAAGATGTGGTAGACCTGGTCCTGCAGGATGCCGGAATAGGTCCTCACCACCATGCTGGTATCAACAAAGGCATTCTGGCCTTCTCCTCCAGCTTCAGACCCTTGATGCTGTCCAGCCAGCTAGAGGCGGTGCTGATGGATGTTTCGTAGTAGCTCTCGACGGCGCTGGTCAGATTTTCCAGGGTTCCCTGCGCTCCATCAGCCTCGGCAACATCAGCGGCCGGTTCCTCAGGCGTACCCTCCTCAGCTTGCCTAGGCAGACGGAGGCCCTGAGCAT

Function

NR:

description
apolipoprotein C-II-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258954 False 794 lncRNA 0.47 2 13540471 13541320
TU258955 False 580 lncRNA 0.47 2 13540471 13541320
TU258956 False 820 lncRNA 0.48 2 13540471 13541320
TU258957 True 700 lncRNA 0.47 2 13540471 13541320

Neighbor

gene id symbol gene type direction distance location
LOC110510190 LOC106577499 coding downstream 58530 13480119 ~ 13481941 (-)
LOC110505114 NA coding downstream 65974 13463634 ~ 13474497 (-)
LOC110510175 LOC106577487 coding downstream 81423 13440784 ~ 13459048 (-)
LOC110510167 LOC106577478 coding downstream 101051 13435596 ~ 13439420 (-)
LOC110510106 LOC106577440 coding downstream 129800 13388409 ~ 13410671 (-)
LOC110510231 LOC106577531 coding upstream 17173 13558493 ~ 13678675 (-)
rs19 LOC100689943 coding upstream 176924 13718244 ~ 13723892 (-)
LOC110510240 LOC106577561 coding upstream 202213 13743533 ~ 13883559 (-)
LOC110510354 LOC106578237 coding upstream 345228 13886548 ~ 13902511 (-)
LOC110510306 LOC106578229 coding upstream 365025 13906345 ~ 13909374 (-)
G226338 apoa2 non-coding downstream 7769 13529631 ~ 13532702 (-)
G226355 NA non-coding downstream 46218 13493442 ~ 13494253 (-)
G226375 NA non-coding downstream 47378 13492685 ~ 13493093 (-)
G226374 NA non-coding downstream 48059 13492151 ~ 13492412 (-)
G226372 NA non-coding downstream 52165 13488054 ~ 13488306 (-)
G226422 NA non-coding upstream 79235 13620555 ~ 13623391 (-)
G226429 NA non-coding upstream 97485 13638805 ~ 13639774 (-)
G226446 NA non-coding upstream 150105 13691425 ~ 13691641 (-)
G226447 NA non-coding upstream 151636 13692956 ~ 13693168 (-)
G226484 NA non-coding upstream 206819 13748139 ~ 13811352 (-)
G226294 LOC100136012 other downstream 196096 13344074 ~ 13344375 (-)
G226224 NA other downstream 315956 13223884 ~ 13224515 (-)
G226187 NA other downstream 360199 13177178 ~ 13180272 (-)
G226124 NA other downstream 473114 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 1067411 12472299 ~ 12473060 (-)
wu:fe05a04 LOC106578221 other upstream 385354 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 458416 13995196 ~ 14023153 (-)
G227060 NA other upstream 887473 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 981860 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 1057469 14598789 ~ 14638314 (-)

Expression


Co-expression Network