XLOC_021882 (tspan31)


Basic Information

Item Value
gene id XLOC_021882
gene name tspan31
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36730713 ~ 36750301 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043356
ACAAGAGAACAGGAACGTACTCACATTGGCGAAAACAACATCAGTAGCACATCGTTTCATCTCACCGGTAAATGCCTGAAGATTCAACATGGTTTGCGGAGGATTTACGTGCTCGAAAAACGCCCTCTGCTCGCTAAATGTAGTTTATATGCTTGTGGGTCTCCTGTTGATTGTTGTAGCAGCATGGGGCAAAGGCTTTGGCATCGTCTCCAGCATTCACATCATCGGCGGCGTAATTGCCGTAGGCTTCTTTCTGCAACTGATCGCCATTGTGGGGCTCATAGGAGCGGTCCACCATCACCAAGTCATGCTTTTCTTTTACATGGTCATTCTCTTCGTAGTCTTCCTCTTCCAGTTTGGAGTTTCCTGTTCTTGTCTGGCCATGAATCAGGGTCAGCAGGAGAAGCTGCTGGAATCATCCTGGAAAATAATGAGTAACGACACAAGAATAAGCCTTGAGAAAAAGCTGGACTGCTGTGGCCTTTTCAACAGCACCAACCTCCAggcagacattatgtctgatctACACTTGTGTACATCTCCATGTACACAAAAAAAAGAATGCGTCACCTGCGGTCTGAAGATGCTCCAGCATTCATCAGAAGCTCTGAAGATCCTGGGAGGAGTTGGTCTGTTTTTCAGCTTTACAGAGaTCTTAGGAGTTTGGCTGGCCATGCGCTACAGGAACCAAAAGGACCCGAGAGCAAACCCCAGTGCTTTCCTATAGTCTCTCAGACTGTCAGTCCTAAACTATACGTTCTGTGTAGTCCAGCTATTCCAGTCCCCCTTTGCACAGGTAGAGCGGAGCGCACCAAGAGACATTCGAAGCATTCAACGCAGAGCAAATCTCctgaaaaacacacataaaaacaaaataacatcaggtacaaaacacacacacgcaccattTTGATGATCGATCTGACCCAGTTTCCACACAAGGTCTGCCGAGGGCTAATTTAAAGCAGCAGCAGGAAGAATCATGTATGAAAGGATGCTTGTTCTGGCACTTTTCCTCCATCCTTGACTTGAGAAACTCTTCCTGTTCTGTGTATgcaaccccccccaaaaaaatctgCAATGTAAATTCATTGTGTGCATGTTCATAGCCTCAGTTTCCAGCTCACATCAGTACACATAACCAGTGCTCTGAAATGGTCCCTGTAGTTTCAGTGTAACAAGTGAAACCATATAAACTGTCAACGTTTCGGTAAAATTCTGTCATGTATCTCCCACTGGGGGATAAAAATCCTGTGTTTTGTGCGATGCTTTAATGAAGTCCGTCTCGATGAGGTGACCAGTCCAGCCTATGGGATATTAGTTTAGGAATTAGACGTAGTACatgaatatttaaagaaaaagaaaacacaaacttGTGTAACTGAGCCATGTGAATTGGAGGATTTCCCTGCCGATGGACTGCAGTCCTCCTGTTGTACATAGTCTTTGCTGTGACAGGGTTGACCGATTTACCGCTTTTTTTCCCCCAATCTTTATTTAAAGCAGTGAGATCTTACCGCCTCAGTCCGGCCTCAATGTTCTCACTGGACTTTTTAAGTTCTCGATCTCCCCTTAGTATTACTCACGGATATAGTGTTTTTAATATCTTATGCATTGTTGTGTTGAAATGATCTCAGTGTGCCATTTATTCGGTTGTCTGTCGGCTTAGTTTAAGCTACTATTTTTATTCGCAATCATGTATCGTTTGTTTACAGCTTTTCTAAACCGTACTAACAGCATCAGGTCCATGATTTTAGCACTGAGCAATATGGAAGCCTGTTTTTGCCACTTAGTAATGATCGTAATAAAAGGTAATTATGACT

Function

symbol description
tspan31 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN31 (tetraspanin 31).

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1123 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN31 (tetraspanin 31).

Ensembl:

ensembl_id ENSDARG00000074554

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043356 True 1823 mRNA 0.44 6 36730713 36750301

Neighbor

gene id symbol gene type direction distance location
XLOC_021881 gpr182 coding upstream 75073 36653376 ~ 36655640 (+)
XLOC_021880 pip4k2ca coding upstream 85578 36616717 ~ 36645135 (+)
XLOC_021879 igfbp6b coding upstream 124876 36601984 ~ 36605837 (+)
XLOC_021878 NA coding upstream 144962 36585179 ~ 36585751 (+)
XLOC_021877 FO704757.1 coding upstream 239479 36491114 ~ 36491234 (+)
XLOC_021883 march9 coding downstream 21292 36771593 ~ 36798620 (+)
XLOC_021884 dre-mir-2191 coding downstream 39922 36790223 ~ 36790332 (+)
XLOC_021885 NA coding downstream 92331 36842632 ~ 36845980 (+)
XLOC_021886 CR926464.1 coding downstream 141428 36891729 ~ 36895369 (+)
XLOC_021887 NA coding downstream 276049 37026350 ~ 37038409 (+)
XLOC_021876 NA non-coding upstream 242084 36458347 ~ 36488629 (+)
XLOC_021875 NA non-coding upstream 310435 36418119 ~ 36420278 (+)
XLOC_021874 NA non-coding upstream 364796 36364905 ~ 36365917 (+)
XLOC_021889 NA non-coding downstream 362986 37113287 ~ 37118114 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G13721 NA non-coding CI01000001 null 1929504 ~ 1933413 (+)